Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 3.6e-64 248.1 122 100.0
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 1.3e-58 229.6 122 91.8
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 2.1e-56 222.2 122 89.3
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 2.8e-56 221.9 114 95.6
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 4.0e-55 218.0 118 89.8
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 2.0e-54 215.7 123 87.8
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 2.0e-54 215.7 123 87.8
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 4.4e-54 214.5 123 87.0
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 7.5e-54 213.8 123 85.4
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 7.5e-54 213.8 123 85.4
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 1.7e-53 212.6 123 86.2
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 3.7e-53 211.5 123 84.6
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 8.3e-53 210.3 123 84.6
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 8.3e-53 210.3 123 84.6
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-52 209.5 123 84.6
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-52 209.5 123 84.6
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-52 209.5 123 84.6
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 1.4e-52 209.5 123 84.6
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 1.4e-52 209.5 123 84.6
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 5.4e-52 207.6 123 82.9
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-48 196.1 124 80.6
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 1.6e-43 179.5 122 77.0
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 9.9e-38 160.2 122 68.0
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 6.6e-26 120.9 123 51.2
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 3.3e-25 118.6 126 52.4
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 7.3e-25 117.5 129 48.1
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 7.3e-25 117.5 130 53.8
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 2.1e-24 115.9 126 50.8
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 2.1e-24 115.9 121 55.4
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 6.2e-24 114.4 123 49.6
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 6.2e-24 114.4 125 50.4
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 8.1e-24 114.0 127 50.4
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 8.1e-24 114.0 131 53.4
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 1.1e-23 113.6 126 51.6
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.1e-23 113.6 123 49.6
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 1.8e-23 112.8 126 53.2
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 2.4e-23 112.5 127 51.2
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 2.4e-23 112.5 131 50.4
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-23 112.1 122 50.8
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.1e-23 112.1 122 50.8
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 3.1e-23 112.1 122 50.8
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 4.0e-23 111.7 129 47.3
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.0e-23 111.7 123 48.8
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 5.3e-23 111.3 125 49.6
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 5.3e-23 111.3 132 50.0
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 6.9e-23 110.9 124 49.2
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 6.9e-23 110.9 129 52.7
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 1.2e-22 110.2 129 48.1
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.5e-22 109.8 125 51.2
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 2.0e-22 109.4 128 51.6
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 2.0e-22 109.4 128 51.6
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 2.0e-22 109.4 124 48.4
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.0e-22 109.4 120 50.0
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 2.6e-22 109.0 129 45.7
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 4.4e-22 108.2 122 47.5
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 4.4e-22 108.2 124 50.8
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 7.6e-22 107.5 129 48.8
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 9.9e-22 107.1 121 53.7
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 9.9e-22 107.1 132 49.2
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 9.9e-22 107.1 128 50.8
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 9.9e-22 107.1 125 50.4
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 1.3e-21 106.7 133 45.1
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 1.3e-21 106.7 125 50.4
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.7e-21 106.3 126 47.6
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 2.2e-21 105.9 137 46.7
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 2.9e-21 105.5 130 47.7
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 2.9e-21 105.5 128 50.0
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.9e-21 105.5 120 48.3
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 4.9e-21 104.8 129 44.2
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 8.4e-21 104.0 130 49.2
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 8.4e-21 104.0 128 46.1
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 1.4e-20 103.2 129 45.7
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 1.9e-20 102.8 127 44.9
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 2.4e-20 102.4 133 48.1
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 3.2e-20 102.1 101 54.5
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 3.2e-20 102.1 130 43.8
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 3.2e-20 102.1 128 43.0
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 3.2e-20 102.1 131 43.5
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 4.2e-20 101.7 136 42.6
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 5.4e-20 101.3 126 47.6
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 5.4e-20 101.3 129 43.4
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 7.1e-20 100.9 134 47.0
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.2e-19 100.1 131 47.3
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.2e-19 100.1 131 47.3
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.6e-19 99.8 138 43.5
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.6e-19 99.8 135 43.7
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.7e-19 99.0 115 45.2
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.5e-19 98.6 131 46.6
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 3.5e-19 98.6 126 45.2
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.6e-19 98.2 131 46.6
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 4.6e-19 98.2 134 41.8
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 6.0e-19 97.8 133 48.1
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 1.0e-18 97.1 135 42.2
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.7e-18 96.3 110 52.7
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.7e-18 96.3 129 44.2
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 2.3e-18 95.9 139 41.7
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 3.0e-18 95.5 135 40.7
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 8.7e-18 94.0 126 44.4
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.5e-17 92.4 123 43.9
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.3e-16 90.1 136 40.4
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 2.1e-16 89.4 143 38.5
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 2.8e-16 89.0 126 39.7
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 6.2e-16 87.8 86 51.2
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 8.1e-16 87.4 95 50.5
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.8e-15 86.3 125 44.8
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 4.0e-15 85.1 124 44.4
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.9e-13 79.0 92 44.6
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 6.4e-13 77.8 144 34.0
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 1.1e-12 77.0 94 43.6
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 2.4e-12 75.9 136 35.3
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 7.1e-12 74.3 118 40.7
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 7.1e-12 74.3 117 39.3
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.2e-11 73.6 102 43.1
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.1e-11 72.8 84 44.0
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 2.3e-10 69.3 78 47.4
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 5.1e-10 68.2 124 38.7
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 8.7e-10 67.4 123 40.7
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.9e-09 66.2 71 47.9
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 6.9e-07 57.8 97 34.0


User provided reference genes

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