Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR129310 Cardamine hirsuta HOM05D002503 ORTHO05D002810 1.4e-62 242.7 115 100.0
CARHR205500 Cardamine hirsuta HOM05D002503 ORTHO05D002810 4.5e-32 141.4 117 65.0
AL6G18020 Arabidopsis lyrata HOM05D002503 ORTHO05D002810 2.3e-28 129.0 117 60.7
AT5G07670 Arabidopsis thaliana HOM05D002503 ORTHO05D002810 2.3e-28 129.0 116 60.3
Carub.0006s0664 Capsella rubella HOM05D002503 ORTHO05D002810 3.9e-28 128.3 118 61.9
Sp6g35230 Schrenkiella parvula HOM05D002503 ORTHO05D002810 5.3e-25 117.9 122 53.3
Aa31LG3G18780 Aethionema arabicum HOM05D002503 ORTHO05D002810 2.5e-22 109.0 125 51.2
Thhalv10013413m.g Eutrema salsugineum HOM05D002503 ORTHO05D002810 1.6e-21 106.3 122 50.0
THA.LOC104801535 Tarenaya hassleriana HOM05D002503 ORTHO05D002810 5.7e-19 97.8 125 44.8
BcaC06g32496 Brassica carinata HOM05D002503 ORTHO05D002810 4.1e-17 91.7 119 44.5
BraA10t44980Z Brassica rapa HOM05D002503 ORTHO05D002810 3.4e-16 88.6 115 44.3
A10p29370 Brassica napus HOM05D002503 ORTHO05D002810 7.7e-16 87.4 115 44.3
BcaC06g32418 Brassica carinata HOM05D002503 ORTHO05D002810 2.5e-14 82.4 115 44.3
C09p69730 Brassica napus HOM05D002503 ORTHO05D002810 2.5e-14 82.4 115 44.3
BolC9t59716H Brassica oleracea HOM05D002503 ORTHO05D002810 2.5e-14 82.4 115 44.3
Actinidia13582 Actinidia chinensis HOM05D002503 ORTHO05D002810 2.2e-10 69.3 84 44.0
CSS0024999 Camellia sinensis var. sinensis HOM05D002503 ORTHO05D002810 2.2e-10 69.3 96 43.8
SGA_v2.0_scaffold44G16552 Striga asiatica HOM05D002503 ORTHO05D002810 2.2e-10 69.3 87 42.5
CiPaw.03G092300 Carya illinoinensis HOM05D002503 ORTHO05D002810 2.8e-10 68.9 116 42.2
COL.COLO4_14103 Corchorus olitorius HOM05D002503 ORTHO05D002810 2.8e-10 68.9 70 48.6
unitig_0.g1949 Utricularia gibba HOM05D002503 ORTHO05D002810 4.8e-10 68.2 101 38.6
Cfa008152 Carpinus fangiana HOM05D002503 ORTHO05D002810 8.2e-10 67.4 73 50.7
Haze_13879 Corylus avellana HOM05D002503 ORTHO05D002810 8.2e-10 67.4 73 50.7
Dinv06569 Davidia involucrata HOM05D002503 ORTHO05D002810 1.1e-09 67.0 83 47.0
Gohir.A12G197900 Gossypium hirsutum HOM05D002503 ORTHO05D002810 1.1e-09 67.0 76 43.4
Thecc.03G153800 Theobroma cacao HOM05D002503 ORTHO05D002810 1.1e-09 67.0 78 46.2
vmacro06814 Vaccinium macrocarpon HOM05D002503 ORTHO05D002810 1.1e-09 67.0 89 43.8
CSS0014056 Camellia sinensis var. sinensis HOM05D002503 ORTHO05D002810 1.4e-09 66.6 84 44.0
SalBow2G3023 Salvia bowleyana HOM05D002503 ORTHO05D002810 1.4e-09 66.6 86 41.9
Duzib084G1134 Durio zibethinus HOM05D002503 ORTHO05D002810 1.8e-09 66.2 76 46.1
Migut.F01189 Erythranthe guttata HOM05D002503 ORTHO05D002810 1.8e-09 66.2 71 47.9
Lj1A978T43 Lonicera japonica HOM05D002503 ORTHO05D002810 1.8e-09 66.2 85 43.5
Manes.14G036800 Manihot esculenta HOM05D002503 ORTHO05D002810 1.8e-09 66.2 76 43.4
CiPaw.04G059100 Carya illinoinensis HOM05D002503 ORTHO05D002810 2.4e-09 65.9 103 37.9
Duzib205G0795 Durio zibethinus HOM05D002503 ORTHO05D002810 2.4e-09 65.9 76 44.7
Gorai.008G215600 Gossypium raimondii HOM05D002503 ORTHO05D002810 2.4e-09 65.9 51 56.9
Oeu017788.1 Olea europaea HOM05D002503 ORTHO05D002810 2.4e-09 65.9 72 45.8
Peaxi162Scf00241g00029 Petunia axillaris HOM05D002503 ORTHO05D002810 3.1e-09 65.5 59 55.9
Gohir.D12G200500 Gossypium hirsutum HOM05D002503 ORTHO05D002810 5.3e-09 64.7 76 42.1
Gorai.003G113000 Gossypium raimondii HOM05D002503 ORTHO05D002810 5.3e-09 64.7 76 47.4
Aa31LG5G90 Aethionema arabicum HOM05D002503 ORTHO05D002810 6.9e-09 64.3 100 43.0
Glyma.12G006500 Glycine max HOM05D002503 ORTHO05D002810 6.9e-09 64.3 51 62.7
Gohir.A03G059400 Gossypium hirsutum HOM05D002503 ORTHO05D002810 9.1e-09 63.9 76 46.1
MSTRG.132 Avicennia marina HOM05D002503 ORTHO05D002810 1.2e-08 63.5 71 46.5
ClCG07G016810 Citrullus lanatus HOM05D002503 ORTHO05D002810 1.2e-08 63.5 76 44.7
MELO3C017667.2 Cucumis melo HOM05D002503 ORTHO05D002810 1.2e-08 63.5 76 46.1
CsaV3_4G004000 Cucumis sativus L. HOM05D002503 ORTHO05D002810 1.2e-08 63.5 76 46.1
Lalb_Chr19g0140341 Lupinus albus HOM05D002503 ORTHO05D002810 1.2e-08 63.5 47 61.7
Gohir.D03G106500 Gossypium hirsutum HOM05D002503 ORTHO05D002810 1.5e-08 63.2 76 46.1
Potri.001G125800 Populus trichocarpa HOM05D002503 ORTHO05D002810 1.5e-08 63.2 76 43.4
Rhsim03G0166100 Rhododendron simsii HOM05D002503 ORTHO05D002810 2.0e-08 62.8 87 42.5
Solyc03g093310.3 Solanum lycopersicum HOM05D002503 ORTHO05D002810 2.0e-08 62.8 83 44.6
Sopen03g024090 Solanum pennellii HOM05D002503 ORTHO05D002810 2.0e-08 62.8 83 44.6
Glyma.09G229800 Glycine max HOM05D002503 ORTHO05D002810 2.6e-08 62.4 51 60.8
Nitab4.5_0003490g0010 Nicotiana tabacum HOM05D002503 ORTHO05D002810 2.6e-08 62.4 59 54.2
Sed0006070 Sechium edule HOM05D002503 ORTHO05D002810 2.6e-08 62.4 51 60.8
arahy.Tifrunner.gnm1.ann1.IA95G7 Arachis hypogaea HOM05D002503 ORTHO05D002810 3.4e-08 62.0 76 46.1
arahy.Tifrunner.gnm1.ann1.MBUZ7W Arachis hypogaea HOM05D002503 ORTHO05D002810 3.4e-08 62.0 76 46.1
MD02G1213700 Malus domestica HOM05D002503 ORTHO05D002810 3.4e-08 62.0 96 40.6
MD07G1113100 Malus domestica HOM05D002503 ORTHO05D002810 3.4e-08 62.0 120 36.7
Potri.003G107900 Populus trichocarpa HOM05D002503 ORTHO05D002810 3.4e-08 62.0 69 46.4
QL09p005350 Quercus lobata HOM05D002503 ORTHO05D002810 3.4e-08 62.0 51 58.8
Lalb_Chr01g0000331 Lupinus albus HOM05D002503 ORTHO05D002810 4.5e-08 61.6 123 38.2
Manes.06G133700 Manihot esculenta HOM05D002503 ORTHO05D002810 4.5e-08 61.6 47 55.3
TWI39G0886 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 4.5e-08 61.6 58 51.7
TWI39G1168 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 4.5e-08 61.6 76 42.1
DCAR_020183 Daucus carota HOM05D002503 ORTHO05D002810 5.9e-08 61.2 53 58.5
Nitab4.5_0001267g0140 Nicotiana tabacum HOM05D002503 ORTHO05D002810 5.9e-08 61.2 47 61.7
Sabra03G0074800 Salix brachista HOM05D002503 ORTHO05D002810 5.9e-08 61.2 69 44.9
PGSC0003DMG400014829 Solanum tuberosum HOM05D002503 ORTHO05D002810 5.9e-08 61.2 83 44.6
MD07G1252400 Malus domestica HOM05D002503 ORTHO05D002810 7.7e-08 60.8 61 49.2
MBI04_g09507_MAGBIO Magnolia biondii HOM05D002503 ORTHO05D002810 1.0e-07 60.5 86 39.5
Manes.05G050000 Manihot esculenta HOM05D002503 ORTHO05D002810 1.0e-07 60.5 51 49.0
TWI14G0687 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 1.0e-07 60.5 58 50.0
Atru.chr1.754 Acer truncatum HOM05D002503 ORTHO05D002810 1.3e-07 60.1 84 39.3
CANSAT56G2174 Cannabis sativa HOM05D002503 ORTHO05D002810 1.7e-07 59.7 51 60.8
Migut.F00485 Erythranthe guttata HOM05D002503 ORTHO05D002810 1.7e-07 59.7 72 43.1
Lj9A563T52 Lonicera japonica HOM05D002503 ORTHO05D002810 1.7e-07 59.7 51 51.0
HanXRQChr02g0045091 Helianthus annuus HOM05D002503 ORTHO05D002810 2.2e-07 59.3 51 54.9
HanXRQChr04g0123401 Helianthus annuus HOM05D002503 ORTHO05D002810 2.2e-07 59.3 51 54.9
MD01G1182100 Malus domestica HOM05D002503 ORTHO05D002810 2.2e-07 59.3 62 48.4
VMungo1127G1230 Vigna mungo HOM05D002503 ORTHO05D002810 2.2e-07 59.3 83 45.8
Nn6g33945 Nelumbo nucifera HOM05D002503 ORTHO05D002810 2.9e-07 58.9 76 42.1
Prupe.2G136200 Prunus persica HOM05D002503 ORTHO05D002810 2.9e-07 58.9 122 34.4
TPR.G3641 Trifolium pratense HOM05D002503 ORTHO05D002810 2.9e-07 58.9 76 42.1
MELO3C017665.2 Cucumis melo HOM05D002503 ORTHO05D002810 3.8e-07 58.5 76 44.7
CsaV3_4G004010 Cucumis sativus L. HOM05D002503 ORTHO05D002810 3.8e-07 58.5 76 44.7
Eucgr.A02899 Eucalyptus grandis HOM05D002503 ORTHO05D002810 3.8e-07 58.5 51 51.0
Cpa.g.c29748.1 Carica papaya HOM05D002503 ORTHO05D002810 5.0e-07 58.2 61 49.2
CDE11G1109 Ceratophyllum demersum HOM05D002503 ORTHO05D002810 5.0e-07 58.2 129 30.2
DCAR_018114 Daucus carota HOM05D002503 ORTHO05D002810 5.0e-07 58.2 51 51.0
Prupe.2G275900 Prunus persica HOM05D002503 ORTHO05D002810 5.0e-07 58.2 63 47.6
Lj3g0006102 Lotus japonicus HOM05D002503 ORTHO05D002810 6.5e-07 57.8 47 59.6
Manes.01G269900 Manihot esculenta HOM05D002503 ORTHO05D002810 6.5e-07 57.8 47 51.1
BcaC01g06088 Brassica carinata HOM05D002503 ORTHO05D002810 8.5e-07 57.4 57 47.4
CANSAT56G3712 Cannabis sativa HOM05D002503 ORTHO05D002810 8.5e-07 57.4 51 56.9
Phvul.005G008500 Phaseolus vulgaris HOM05D002503 ORTHO05D002810 8.5e-07 57.4 79 49.4
Phvul.011G007400 Phaseolus vulgaris HOM05D002503 ORTHO05D002810 8.5e-07 57.4 51 54.9
RcHm_v2.0_Chr1g0374141 Rosa chinensis HOM05D002503 ORTHO05D002810 8.5e-07 57.4 60 48.3
vmacro13456 Vaccinium macrocarpon HOM05D002503 ORTHO05D002810 8.5e-07 57.4 76 43.4
BcaB05g21601 Brassica carinata HOM05D002503 ORTHO05D002810 1.1e-06 57.0 95 43.2
Duzib138G0734 Durio zibethinus HOM05D002503 ORTHO05D002810 1.1e-06 57.0 49 49.0
TAR375G0105 Trochodendron aralioides HOM05D002503 ORTHO05D002810 1.1e-06 57.0 51 52.9
Ciclev10004858m.g Citrus clementina HOM05D002503 ORTHO05D002810 1.4e-06 56.6 67 43.3
Lj3g0017890 Lotus japonicus HOM05D002503 ORTHO05D002810 1.4e-06 56.6 73 43.8
Nn1g00982 Nelumbo nucifera HOM05D002503 ORTHO05D002810 1.4e-06 56.6 51 51.0
PSO063G7581 Papaver somniferum HOM05D002503 ORTHO05D002810 1.4e-06 56.6 57 49.1
PSO782G2868 Papaver somniferum HOM05D002503 ORTHO05D002810 1.4e-06 56.6 57 49.1
THA.LOC104814076 Tarenaya hassleriana HOM05D002503 ORTHO05D002810 1.4e-06 56.6 53 45.3
Atru.chr5.221 Acer truncatum HOM05D002503 ORTHO05D002810 1.9e-06 56.2 47 46.8
PGR042G2834 Punica granatum HOM05D002503 ORTHO05D002810 1.9e-06 56.2 124 36.3
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 1.9e-06 56.2 78 39.7
TAR374G1076 Trochodendron aralioides HOM05D002503 ORTHO05D002810 1.9e-06 56.2 76 39.5
Dinv43661 Davidia involucrata HOM05D002503 ORTHO05D002810 2.5e-06 55.8 50 52.0
Lsat_1_v5_gn_7_10161 Lactuca sativa HOM05D002503 ORTHO05D002810 2.5e-06 55.8 47 53.2
Psat0s1875g0200 Pisum sativum HOM05D002503 ORTHO05D002810 2.5e-06 55.8 42 61.9
Solyc01g095800.3 Solanum lycopersicum HOM05D002503 ORTHO05D002810 2.5e-06 55.8 70 42.9
Sopen01g039550 Solanum pennellii HOM05D002503 ORTHO05D002810 2.5e-06 55.8 70 42.9
QL04p035906 Quercus lobata HOM05D002503 ORTHO05D002810 3.2e-06 55.5 47 53.2
Sed0012643 Sechium edule HOM05D002503 ORTHO05D002810 4.2e-06 55.1 76 40.8
Aa31LG3G7840 Aethionema arabicum HOM05D002503 ORTHO05D002810 5.5e-06 54.7 57 47.4
Cc02_g04380 Coffea canephora HOM05D002503 ORTHO05D002810 5.5e-06 54.7 74 40.5
Lsat_1_v5_gn_8_10221 Lactuca sativa HOM05D002503 ORTHO05D002810 5.5e-06 54.7 43 55.8
ATR0317G122 Amborella trichopoda HOM05D002503 ORTHO05D002810 7.2e-06 54.3 59 40.7
CAN.G48.42 Capsicum annuum HOM05D002503 ORTHO05D002810 7.2e-06 54.3 47 57.4
Ca_25533_v3 Cicer arietinum L. HOM05D002503 ORTHO05D002810 7.2e-06 54.3 74 40.5
Thhalv10028634m.g Eutrema salsugineum HOM05D002503 ORTHO05D002810 7.2e-06 54.3 96 40.6
PGSC0003DMG401000105 Solanum tuberosum HOM05D002503 ORTHO05D002810 7.2e-06 54.3 70 41.4
FvH4_7g27300 Fragaria vesca HOM05D002503 ORTHO05D002810 9.4e-06 53.9 51 51.0
FAN01G2556 Fragaria x ananassa HOM05D002503 ORTHO05D002810 9.4e-06 53.9 51 51.0
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.4e-06 53.9 51 51.0
FAN03G2620 Fragaria x ananassa HOM05D002503 ORTHO05D002810 9.4e-06 53.9 51 51.0
FAN06G3996 Fragaria x ananassa HOM05D002503 ORTHO05D002810 9.4e-06 53.9 51 51.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.4e-06 53.9 51 51.0
FAN10G4047 Fragaria x ananassa HOM05D002503 ORTHO05D002810 9.4e-06 53.9 51 51.0
HanXRQChr16g0512811 Helianthus annuus HOM05D002503 ORTHO05D002810 9.4e-06 53.9 93 34.4
Rhsim07G0032400 Rhododendron simsii HOM05D002503 ORTHO05D002810 9.4e-06 53.9 47 53.2
RcHm_v2.0_Chr1g0348741 Rosa chinensis HOM05D002503 ORTHO05D002810 9.4e-06 53.9 47 51.1


User provided reference genes

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