Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.5e-159 565.5 304 100.0
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 6.0e-153 544.3 304 95.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 2.0e-148 529.3 304 92.4
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.4e-146 523.1 304 92.1
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.8e-142 508.8 304 90.5
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.7e-142 508.4 304 89.8
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 2.4e-141 505.8 315 86.0
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 4.5e-140 501.5 304 86.2
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.3e-139 500.0 308 87.0
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.2e-139 499.2 308 86.4
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 2.2e-139 499.2 310 86.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.9e-139 498.8 309 86.4
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 5.0e-139 498.0 306 87.9
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.8e-134 481.5 304 85.2
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 2.0e-132 476.1 305 82.6
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.9e-130 469.5 305 82.0
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.1e-129 466.1 305 81.0
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.0e-128 463.8 305 80.3
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 5.7e-127 458.0 306 81.4
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.8e-125 453.0 299 80.9
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 3.1e-125 452.2 306 80.7
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 5.3e-125 451.4 304 79.9
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.2e-124 450.3 304 79.3
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.6e-124 449.9 305 77.7
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 3.5e-124 448.7 302 79.8
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 3.5e-124 448.7 301 78.1
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 3.5e-124 448.7 301 78.4
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 3.5e-124 448.7 305 79.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 1.7e-123 446.4 305 77.7
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 2.2e-123 446.0 305 77.4
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.2e-123 446.0 305 77.7
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.9e-123 445.7 301 78.4
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 1.9e-122 443.0 305 77.4
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 3.2e-122 442.2 305 78.4
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 3.2e-122 442.2 296 79.4
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.2e-122 442.2 304 78.0
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.2e-122 442.2 304 78.0
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 7.2e-122 441.0 291 81.1
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 4.7e-121 438.3 306 77.8
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 6.1e-121 438.0 301 79.4
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 8.0e-121 437.6 298 79.5
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 1.8e-120 436.4 300 79.0
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 1.2e-119 433.7 306 77.1
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.2e-119 433.7 301 76.7
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.2e-118 429.5 293 78.2
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 6.3e-118 427.9 306 76.5
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.3e-118 427.6 305 75.4
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 8.3e-118 427.6 305 75.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.4e-117 426.8 293 79.2
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.1e-117 425.6 305 74.4
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.0e-117 424.5 305 74.4
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.0e-117 424.5 305 74.4
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 7.0e-117 424.5 293 77.5
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 3.5e-116 422.2 305 73.4
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.7e-115 419.9 292 78.4
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.2e-115 419.5 305 75.7
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 2.2e-115 419.5 305 75.4
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 2.9e-115 419.1 299 74.2
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 6.5e-115 417.9 293 78.2
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 1.1e-114 417.2 297 76.1
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.1e-114 417.2 293 78.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.5e-114 416.8 301 72.8
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.2e-114 415.6 305 72.8
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-113 413.3 292 77.7
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.7e-113 412.5 305 74.8
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 2.7e-113 412.5 293 75.8
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.7e-113 412.5 298 73.2
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 4.7e-113 411.8 290 77.9
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.0e-112 408.7 305 71.5
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 5.2e-112 408.3 305 71.8
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.0e-111 406.4 305 71.8
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 2.0e-111 406.4 305 71.5
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 2.0e-111 406.4 305 71.5
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.6e-111 406.0 305 70.8
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 2.6e-111 406.0 293 74.7
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.4e-111 405.6 293 74.7
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 4.8e-110 401.7 296 72.6
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 4.8e-110 401.7 282 75.9
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 4.8e-110 401.7 305 70.2
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.1e-109 400.6 305 70.5
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.1e-109 400.6 305 70.8
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 1.4e-109 400.2 305 70.5
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.1e-109 399.1 305 72.5
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 4.1e-109 398.7 305 70.8
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 1.2e-108 397.1 305 68.9
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.3e-107 392.9 305 69.2
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 1.9e-106 389.8 306 68.6
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 3.3e-106 389.0 293 71.3
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.6e-105 386.7 282 76.6
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 2.1e-105 386.3 305 69.5
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.4e-104 383.6 282 73.0
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 2.3e-104 382.9 292 71.2
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 4.0e-104 382.1 297 69.0
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 1.5e-103 380.2 293 71.7
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 5.4e-101 371.7 299 68.2
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.2e-100 370.5 282 74.1
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 2.7e-100 369.4 305 64.3
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.7e-99 366.7 300 65.7
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.9e-99 365.9 301 65.1
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 6.6e-99 364.8 291 67.7
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 1.6e-97 360.1 292 65.4
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 8.9e-96 354.4 298 63.8
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 4.4e-95 352.1 299 63.2
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.7e-91 340.1 274 68.6
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 3.3e-90 335.9 277 68.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 8.9e-88 327.8 282 63.1
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 8.9e-88 327.8 238 76.5
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.0e-80 302.4 195 82.1
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.7e-78 297.0 304 53.9
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.4e-72 277.3 194 78.4
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 3.1e-72 276.2 296 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 1.7e-70 270.4 301 51.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 6.2e-65 251.9 164 81.7
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 3.4e-63 246.1 159 81.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 1.2e-60 237.7 295 50.8
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 1.3e-59 234.2 196 64.8
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 5.1e-59 232.3 192 65.1
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.6e-58 228.8 339 44.5
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 9.9e-55 218.0 139 80.6
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.1e-52 210.3 292 45.9
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 2.5e-50 203.4 239 54.4
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 6.2e-49 198.7 110 93.6
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 4.9e-46 189.1 143 72.7
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.5e-44 183.0 186 57.5
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 1.0e-43 181.4 115 83.5
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 3.4e-39 166.4 212 47.6
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 3.7e-33 146.4 182 43.4
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.3e-33 145.6 97 80.4
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 2.6e-31 140.2 86 89.5
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.5e-31 139.4 99 71.7
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.5e-30 135.6 172 48.8
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 8.5e-22 108.6 60 86.7
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 6.7e-19 99.0 296 31.8
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.7e-17 94.4 303 29.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 1.8e-16 90.9 150 41.3
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.3e-14 84.7 172 36.0
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.3e-14 84.7 85 62.4
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 8.5e-14 82.0 54 68.5
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 2.7e-12 77.0 195 33.3
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 3.6e-12 76.6 45 77.8


User provided reference genes

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