Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 8.4e-41 169.9 82 100.0
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 5.8e-18 94.0 44 90.9
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 5.8e-18 94.0 44 90.9
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.0e-17 93.2 44 93.2
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 3.8e-17 91.3 44 88.6
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 3.8e-17 91.3 44 88.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 3.8e-17 91.3 44 90.9
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 4.9e-17 90.9 44 88.6
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.9e-16 89.0 44 86.4
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 1.9e-16 89.0 44 86.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 1.9e-16 89.0 44 86.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.9e-16 89.0 44 86.4
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.1e-15 85.5 43 81.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 3.5e-15 84.7 44 79.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.3e-14 82.8 45 75.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 1.8e-14 82.4 44 77.3
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 1.8e-14 82.4 44 77.3
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.8e-14 82.4 44 77.3
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.9e-14 81.3 44 79.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 6.7e-14 80.5 44 75.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 6.7e-14 80.5 44 75.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 6.7e-14 80.5 44 75.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 6.7e-14 80.5 44 75.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 8.7e-14 80.1 43 76.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.7e-14 80.1 44 75.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-13 79.7 51 64.7
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 1.5e-13 79.3 44 77.3
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.5e-13 79.3 44 77.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 1.5e-13 79.3 44 77.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 1.9e-13 79.0 43 76.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.9e-13 79.0 50 70.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.5e-13 78.6 45 73.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 2.5e-13 78.6 45 73.3
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 2.5e-13 78.6 44 70.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 3.3e-13 78.2 44 72.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 3.3e-13 78.2 44 70.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 3.3e-13 78.2 44 72.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 72.7
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 72.7
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 68.2
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 65.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 75.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.3e-13 77.8 44 75.0
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 5.7e-13 77.4 44 72.7
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 7.4e-13 77.0 43 76.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 7.4e-13 77.0 42 76.2
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 7.4e-13 77.0 44 72.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 7.4e-13 77.0 43 72.1
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 7.4e-13 77.0 43 72.1
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 7.4e-13 77.0 43 72.1
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 9.6e-13 76.6 41 78.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 9.6e-13 76.6 45 68.9
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 9.6e-13 76.6 44 70.5
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.3e-12 76.3 44 70.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 1.3e-12 76.3 44 70.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 1.3e-12 76.3 44 72.7
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 2.1e-12 75.5 44 68.2
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 2.1e-12 75.5 44 68.2
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 2.1e-12 75.5 45 66.7
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 2.1e-12 75.5 44 68.2
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 2.8e-12 75.1 44 72.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 2.8e-12 75.1 44 68.2
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 3.7e-12 74.7 62 56.5
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 3.7e-12 74.7 43 72.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 3.7e-12 74.7 44 70.5
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 3.7e-12 74.7 47 66.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 8.2e-12 73.6 39 76.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 8.2e-12 73.6 44 68.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.1e-11 73.2 43 69.8
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 1.4e-11 72.8 44 65.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 1.4e-11 72.8 44 65.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 1.8e-11 72.4 43 72.1
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.8e-11 72.4 44 68.2
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 2.4e-11 72.0 45 66.7
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 2.4e-11 72.0 43 65.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 2.4e-11 72.0 43 69.8
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 2.4e-11 72.0 43 69.8
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 3.1e-11 71.6 43 67.4
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 3.1e-11 71.6 44 63.6
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 5.3e-11 70.9 44 65.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 5.3e-11 70.9 44 68.2
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.3e-11 70.9 44 68.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 5.3e-11 70.9 44 63.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.9e-11 70.5 44 65.9
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.9e-11 70.5 44 65.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.9e-11 70.5 44 65.9
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 6.9e-11 70.5 44 65.9
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 6.9e-11 70.5 44 65.9
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 9.0e-11 70.1 43 67.4
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 1.2e-10 69.7 43 67.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 1.5e-10 69.3 43 65.1
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 1.5e-10 69.3 44 61.4
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.0e-10 68.9 43 67.4
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 2.6e-10 68.6 44 61.4
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 3.4e-10 68.2 43 60.5
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 4.5e-10 67.8 43 67.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 7.6e-10 67.0 43 60.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 7.6e-10 67.0 43 62.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 7.6e-10 67.0 44 61.4
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.0e-09 66.6 43 62.8
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.3e-09 66.2 41 63.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.2e-09 65.5 40 65.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.4e-08 62.8 44 63.6
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.9e-08 62.4 44 63.6
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 3.2e-08 61.6 39 69.2
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 4.2e-08 61.2 43 53.5
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 4.2e-08 61.2 43 58.1
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 6.1e-07 57.4 50 44.0
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 6.1e-07 57.4 48 47.9


User provided reference genes

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