Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 3.7e-163 578.2 299 100.0
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.3e-143 511.5 259 96.5
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 5.6e-143 511.1 278 95.3
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.2e-142 510.0 277 95.3
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 2.8e-142 508.8 277 93.5
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 8.1e-142 507.3 258 95.7
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.8e-141 506.1 276 93.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.1e-141 505.4 276 94.2
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 9.9e-140 500.4 277 92.1
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.2e-139 499.2 259 94.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.1e-138 496.9 276 91.7
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.5e-135 485.7 278 91.4
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 3.6e-134 481.9 250 92.4
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 6.2e-134 481.1 256 89.5
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 8.1e-134 480.7 250 92.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.1e-133 480.3 254 91.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 2.4e-133 479.2 257 90.7
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.4e-133 479.2 250 92.0
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 3.1e-133 478.8 259 88.4
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.1e-133 478.8 254 91.3
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 4.0e-133 478.4 255 90.2
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 6.8e-133 477.6 250 91.2
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 6.8e-133 477.6 250 90.8
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 8.9e-133 477.2 252 91.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 2.6e-132 475.7 250 90.8
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 5.8e-132 474.6 256 89.8
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 7.6e-132 474.2 258 89.5
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-131 473.4 252 90.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.7e-131 473.0 250 90.8
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.8e-131 471.9 250 91.2
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.8e-131 471.9 251 90.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 6.4e-131 471.1 257 88.3
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 6.4e-131 471.1 255 90.2
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.4e-131 471.1 256 87.9
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 8.4e-131 470.7 250 90.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.1e-130 470.3 253 89.7
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.9e-130 469.5 250 89.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.9e-130 469.5 249 90.4
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.2e-130 468.8 250 89.6
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 3.2e-130 468.8 250 89.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 3.2e-130 468.8 250 91.2
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.2e-130 468.8 248 90.3
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 4.1e-130 468.4 252 89.7
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.1e-130 468.4 252 89.7
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.1e-130 468.4 252 89.7
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 5.4e-130 468.0 254 89.0
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 5.4e-130 468.0 249 91.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 7.1e-130 467.6 255 88.2
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 7.1e-130 467.6 251 89.6
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 9.2e-130 467.2 250 89.6
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 9.2e-130 467.2 255 89.0
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.2e-129 466.8 249 89.6
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.2e-129 466.8 249 90.8
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 1.6e-129 466.5 262 87.0
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.1e-129 466.1 248 90.7
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-129 466.1 252 89.3
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.1e-129 466.1 250 89.6
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 2.1e-129 466.1 253 88.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.7e-129 465.7 250 90.4
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.5e-129 465.3 250 89.2
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.5e-129 465.3 251 89.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.0e-129 464.5 250 90.0
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.0e-128 463.8 250 88.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.3e-128 463.4 250 90.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.3e-128 463.4 250 90.0
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.7e-128 463.0 251 89.2
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.3e-128 462.6 255 89.8
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.3e-128 462.6 250 89.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.3e-128 462.6 248 91.1
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 3.9e-128 461.8 242 92.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 5.1e-128 461.5 248 90.7
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 5.1e-128 461.5 250 89.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 5.1e-128 461.5 246 89.0
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 6.6e-128 461.1 245 91.4
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.6e-128 461.1 272 86.4
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 8.7e-128 460.7 250 89.2
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 8.7e-128 460.7 248 89.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 8.7e-128 460.7 249 89.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-127 459.9 251 87.3
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.9e-127 459.5 249 88.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.3e-127 458.8 249 89.6
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 5.6e-127 458.0 256 88.3
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 5.6e-127 458.0 252 87.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.2e-126 456.8 247 88.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 3.6e-126 455.3 273 82.1
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 6.2e-126 454.5 249 88.4
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 9.9e-124 447.2 253 85.8
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 2.2e-123 446.0 248 86.7
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 2.4e-122 442.6 248 85.5
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 3.5e-121 438.7 250 85.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 9.6e-119 430.6 249 85.1
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.1e-118 429.5 248 83.1
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 6.2e-118 427.9 290 80.3
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 6.9e-117 424.5 224 92.0
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.2e-116 423.7 251 81.3
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 2.0e-116 422.9 228 90.4
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 5.8e-116 421.4 353 64.3
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 3.5e-113 412.1 243 81.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 4.6e-113 411.8 251 80.9
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 6.9e-109 397.9 248 76.2
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.0e-104 382.5 208 90.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.2e-97 360.5 191 92.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 6.3e-94 348.2 190 89.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.5e-92 343.6 256 66.4
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 5.7e-87 325.1 171 91.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.3e-86 323.9 171 91.2
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.6e-84 316.2 183 87.4
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 4.5e-84 315.5 181 86.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.9e-83 312.8 168 91.1
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.2e-81 307.4 162 91.4
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 6.5e-75 285.0 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.2e-74 282.3 164 85.4
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-73 280.4 164 83.5
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.7e-73 278.9 145 95.9
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.7e-73 278.9 164 84.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 8.0e-73 278.1 147 94.6
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 3.0e-72 276.2 155 91.0
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 4.4e-71 272.3 155 89.7
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.7e-68 261.5 174 75.3
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-67 260.4 213 66.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 7.2e-66 255.0 146 84.2
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 2.1e-65 253.4 156 80.1
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 3.5e-60 236.1 158 75.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.5e-52 209.5 151 72.2
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 5.9e-52 208.8 191 55.0
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 5.9e-52 208.8 141 75.9
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 8.9e-40 168.3 93 86.0
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.0e-39 167.2 167 56.9
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 9.8e-31 138.3 76 89.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 5.1e-27 125.9 190 44.2
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.5e-26 123.6 71 84.5
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.1e-24 118.2 68 77.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 6.8e-24 115.5 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.7e-20 103.6 55 87.3
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 7.8e-20 102.1 55 85.5
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.3e-18 96.7 50 88.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.8e-17 93.6 46 91.3


User provided reference genes

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