Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR128520 Cardamine hirsuta HOM05D001338 ORTHO05D001239 4.7e-42 174.1 87 100.0
AT2G06500 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 7.0e-30 133.7 87 77.0
Thhalv10009558m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 5.8e-24 114.0 84 64.3
Thhalv10009736m.g Eutrema salsugineum HOM05D001338 ORTHO05D001239 5.8e-24 114.0 84 64.3
CSS0006616 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 2.9e-23 111.7 83 61.4
CSS0006650 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.4e-23 110.5 83 61.4
CSS0011720 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.4e-23 110.5 83 61.4
CSS0023742 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.4e-23 110.5 83 61.4
CSS0027088 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 6.4e-23 110.5 83 61.4
CSS0039736 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 5.4e-22 107.5 83 60.2
RcHm_v2.0_Chr4g0431861 Rosa chinensis HOM05D001338 ORTHO05D001239 7.1e-22 107.1 83 60.2
CSS0047876 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 9.2e-22 106.7 82 59.8
PSO138G0008 Papaver somniferum HOM05D001338 ORTHO05D001239 4.6e-21 104.4 84 58.3
PSO138G0009 Papaver somniferum HOM05D001338 ORTHO05D001239 4.6e-21 104.4 84 58.3
PSO724G0816 Papaver somniferum HOM05D001338 ORTHO05D001239 4.6e-21 104.4 84 59.5
RcHm_v2.0_Chr2g0106921 Rosa chinensis HOM05D001338 ORTHO05D001239 6.0e-21 104.0 85 57.6
CSS0005716 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 7.8e-21 103.6 83 56.6
CARHR257270 Cardamine hirsuta HOM05D001338 ORTHO05D001239 7.8e-21 103.6 81 56.8
RcHm_v2.0_Chr1g0320361 Rosa chinensis HOM05D001338 ORTHO05D001239 7.8e-21 103.6 83 59.0
RcHm_v2.0_Chr1g0377611 Rosa chinensis HOM05D001338 ORTHO05D001239 7.8e-21 103.6 83 59.0
RcHm_v2.0_Chr6g0288531 Rosa chinensis HOM05D001338 ORTHO05D001239 7.8e-21 103.6 83 59.0
RcHm_v2.0_Chr7g0233981 Rosa chinensis HOM05D001338 ORTHO05D001239 7.8e-21 103.6 83 59.0
TWI18G1324 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 7.8e-21 103.6 79 64.6
PSO063G7197 Papaver somniferum HOM05D001338 ORTHO05D001239 1.0e-20 103.2 84 59.5
AT4G10200 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 1.3e-20 102.8 84 58.3
PSO063G4296 Papaver somniferum HOM05D001338 ORTHO05D001239 1.3e-20 102.8 81 60.5
FvH4_2g18762 Fragaria vesca HOM05D001338 ORTHO05D001239 2.3e-20 102.1 84 58.3
PSO478G1760 Papaver somniferum HOM05D001338 ORTHO05D001239 2.3e-20 102.1 84 58.3
PSO832G0537 Papaver somniferum HOM05D001338 ORTHO05D001239 2.3e-20 102.1 84 58.3
Oeu032717.1 Olea europaea HOM05D001338 ORTHO05D001239 3.0e-20 101.7 83 59.0
PSO761G0174 Papaver somniferum HOM05D001338 ORTHO05D001239 3.0e-20 101.7 84 57.1
TWI74G0957 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 3.0e-20 101.7 79 62.0
PSO170G4086 Papaver somniferum HOM05D001338 ORTHO05D001239 3.9e-20 101.3 84 61.9
RcHm_v2.0_Chr2g0172511 Rosa chinensis HOM05D001338 ORTHO05D001239 3.9e-20 101.3 83 57.8
Sp3g17010 Schrenkiella parvula HOM05D001338 ORTHO05D001239 3.9e-20 101.3 86 59.3
Oeu034185.1 Olea europaea HOM05D001338 ORTHO05D001239 5.1e-20 100.9 82 58.5
Oeu039916.1 Olea europaea HOM05D001338 ORTHO05D001239 5.1e-20 100.9 82 58.5
PSO170G2392 Papaver somniferum HOM05D001338 ORTHO05D001239 6.6e-20 100.5 84 56.0
PSO339G5336 Papaver somniferum HOM05D001338 ORTHO05D001239 6.6e-20 100.5 84 57.1
PSO541G1789 Papaver somniferum HOM05D001338 ORTHO05D001239 6.6e-20 100.5 82 57.3
Sp5g13100 Schrenkiella parvula HOM05D001338 ORTHO05D001239 6.6e-20 100.5 82 57.3
BolC1t04120H Brassica oleracea HOM05D001338 ORTHO05D001239 8.6e-20 100.1 81 58.0
PSO339G3227 Papaver somniferum HOM05D001338 ORTHO05D001239 8.6e-20 100.1 81 60.5
Oeu002839.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-19 99.8 83 59.0
Oeu026292.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 58.3
Oeu039478.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-19 99.4 82 58.5
Oeu039971.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 58.3
Oeu051319.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-19 99.4 83 60.2
Oeu060590.1 Olea europaea HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 58.3
PSO170G3017 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO170G4602 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO210G1168 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO210G1814 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO541G0488 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO724G1135 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
PSO764G0071 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 57.1
PSO832G2505 Papaver somniferum HOM05D001338 ORTHO05D001239 1.5e-19 99.4 84 61.9
Oeu039598.1 Olea europaea HOM05D001338 ORTHO05D001239 1.9e-19 99.0 83 57.8
Oeu057765.1 Olea europaea HOM05D001338 ORTHO05D001239 1.9e-19 99.0 83 57.8
RcHm_v2.0_Chr7g0205811 Rosa chinensis HOM05D001338 ORTHO05D001239 1.9e-19 99.0 78 62.8
PSO063G6488 Papaver somniferum HOM05D001338 ORTHO05D001239 2.5e-19 98.6 84 57.1
Oeu020403.1 Olea europaea HOM05D001338 ORTHO05D001239 3.3e-19 98.2 83 57.8
Oeu023192.1 Olea europaea HOM05D001338 ORTHO05D001239 3.3e-19 98.2 84 58.3
Oeu012998.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-19 97.8 83 57.8
Oeu043525.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-19 97.8 83 56.6
Oeu052558.1 Olea europaea HOM05D001338 ORTHO05D001239 4.3e-19 97.8 83 56.6
CANSAT80G1592 Cannabis sativa HOM05D001338 ORTHO05D001239 5.6e-19 97.4 83 57.8
Oeu015894.1 Olea europaea HOM05D001338 ORTHO05D001239 5.6e-19 97.4 82 57.3
Oeu003192.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-19 97.1 83 56.6
Oeu013812.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-19 97.1 83 56.6
Oeu022366.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-19 97.1 83 56.6
Oeu023400.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-19 97.1 83 56.6
Oeu045512.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-19 97.1 83 56.6
PSO144G0154 Papaver somniferum HOM05D001338 ORTHO05D001239 7.3e-19 97.1 81 58.0
EL10Ac7g17250 Beta vulgaris HOM05D001338 ORTHO05D001239 9.5e-19 96.7 83 59.0
Oeu001068.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 80 60.0
Oeu016367.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 81 58.0
Oeu017832.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 80 60.0
Oeu026150.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 80 60.0
Oeu028399.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 80 60.0
Oeu054194.1 Olea europaea HOM05D001338 ORTHO05D001239 9.5e-19 96.7 82 57.3
RcHm_v2.0_Chr3g0452101 Rosa chinensis HOM05D001338 ORTHO05D001239 9.5e-19 96.7 78 61.5
RcHm_v2.0_Chr5g0015121 Rosa chinensis HOM05D001338 ORTHO05D001239 9.5e-19 96.7 78 61.5
CANSAT64G0482 Cannabis sativa HOM05D001338 ORTHO05D001239 1.2e-18 96.3 83 56.6
FvH4_6g47641 Fragaria vesca HOM05D001338 ORTHO05D001239 1.2e-18 96.3 84 56.0
Oeu012004.1 Olea europaea HOM05D001338 ORTHO05D001239 1.2e-18 96.3 83 56.6
PSO063G6584 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-18 96.3 84 54.8
CANSAT01G1407 Cannabis sativa HOM05D001338 ORTHO05D001239 1.6e-18 95.9 83 57.8
Oeu034372.1 Olea europaea HOM05D001338 ORTHO05D001239 1.6e-18 95.9 83 56.6
RcHm_v2.0_Chr5g0059431 Rosa chinensis HOM05D001338 ORTHO05D001239 1.6e-18 95.9 78 61.5
RcHm_v2.0_Chr7g0198801 Rosa chinensis HOM05D001338 ORTHO05D001239 1.6e-18 95.9 78 61.5
Oeu008701.1 Olea europaea HOM05D001338 ORTHO05D001239 2.1e-18 95.5 83 55.4
Oeu028129.1 Olea europaea HOM05D001338 ORTHO05D001239 2.1e-18 95.5 80 60.0
Oeu034648.1 Olea europaea HOM05D001338 ORTHO05D001239 2.1e-18 95.5 82 56.1
Oeu019879.2 Olea europaea HOM05D001338 ORTHO05D001239 2.8e-18 95.1 83 56.6
RcHm_v2.0_Chr7g0200001 Rosa chinensis HOM05D001338 ORTHO05D001239 2.8e-18 95.1 77 61.0
Oeu019018.1 Olea europaea HOM05D001338 ORTHO05D001239 3.6e-18 94.7 80 58.8
Oeu034373.1 Olea europaea HOM05D001338 ORTHO05D001239 3.6e-18 94.7 83 55.4
PSO339G3296 Papaver somniferum HOM05D001338 ORTHO05D001239 3.6e-18 94.7 80 62.5
AL1G56700 Arabidopsis lyrata HOM05D001338 ORTHO05D001239 4.7e-18 94.4 77 59.7
Aqoxy3G01371 Aquilegia oxysepala HOM05D001338 ORTHO05D001239 6.2e-18 94.0 80 57.5
PSO170G3462 Papaver somniferum HOM05D001338 ORTHO05D001239 6.2e-18 94.0 83 59.0
PSO339G2135 Papaver somniferum HOM05D001338 ORTHO05D001239 6.2e-18 94.0 78 59.0
CANSAT35G0841 Cannabis sativa HOM05D001338 ORTHO05D001239 8.1e-18 93.6 83 55.4
CANSAT80G1687 Cannabis sativa HOM05D001338 ORTHO05D001239 8.1e-18 93.6 83 55.4
Oeu022714.1 Olea europaea HOM05D001338 ORTHO05D001239 8.1e-18 93.6 80 57.5
Oeu035515.1 Olea europaea HOM05D001338 ORTHO05D001239 8.1e-18 93.6 83 54.2
Oeu044267.1 Olea europaea HOM05D001338 ORTHO05D001239 8.1e-18 93.6 80 58.8
PSO541G2437 Papaver somniferum HOM05D001338 ORTHO05D001239 8.1e-18 93.6 83 56.6
PSO675G4854 Papaver somniferum HOM05D001338 ORTHO05D001239 8.1e-18 93.6 83 57.8
CARHR034340 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.4e-17 92.8 83 55.4
Oeu029248.1 Olea europaea HOM05D001338 ORTHO05D001239 1.4e-17 92.8 84 53.6
RcHm_v2.0_Chr1g0379061 Rosa chinensis HOM05D001338 ORTHO05D001239 1.4e-17 92.8 78 61.5
RcHm_v2.0_Chr5g0034331 Rosa chinensis HOM05D001338 ORTHO05D001239 1.4e-17 92.8 78 60.3
PSO384G1406 Papaver somniferum HOM05D001338 ORTHO05D001239 1.8e-17 92.4 85 55.3
Oeu034167.1 Olea europaea HOM05D001338 ORTHO05D001239 2.4e-17 92.0 84 52.4
Oeu012605.1 Olea europaea HOM05D001338 ORTHO05D001239 3.1e-17 91.7 82 52.4
EL10Ac3g06626 Beta vulgaris HOM05D001338 ORTHO05D001239 4.0e-17 91.3 79 57.0
Oeu027891.1 Olea europaea HOM05D001338 ORTHO05D001239 4.0e-17 91.3 80 57.5
Oeu031022.1 Olea europaea HOM05D001338 ORTHO05D001239 4.0e-17 91.3 79 57.0
CARHR256860 Cardamine hirsuta HOM05D001338 ORTHO05D001239 5.2e-17 90.9 70 62.9
PSO017G5137 Papaver somniferum HOM05D001338 ORTHO05D001239 5.2e-17 90.9 80 58.8
Oeu045638.1 Olea europaea HOM05D001338 ORTHO05D001239 8.9e-17 90.1 84 53.6
CANSAT35G0728 Cannabis sativa HOM05D001338 ORTHO05D001239 1.2e-16 89.7 84 51.2
PSO063G6596 Papaver somniferum HOM05D001338 ORTHO05D001239 1.2e-16 89.7 80 57.5
RcHm_v2.0_Chr3g0449931 Rosa chinensis HOM05D001338 ORTHO05D001239 1.2e-16 89.7 75 58.7
Atru.chr12.2101 Acer truncatum HOM05D001338 ORTHO05D001239 2.0e-16 89.0 78 56.4
CANSAT11G1935 Cannabis sativa HOM05D001338 ORTHO05D001239 2.0e-16 89.0 81 51.9
TWI74G0618 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 3.4e-16 88.2 78 56.4
PSO801G0075 Papaver somniferum HOM05D001338 ORTHO05D001239 4.4e-16 87.8 72 61.1
PSO339G3643 Papaver somniferum HOM05D001338 ORTHO05D001239 5.8e-16 87.4 73 63.0
MD01G1087700 Malus domestica HOM05D001113 ORTHO05D000968 7.6e-16 87.0 78 56.4
AUR62026124 Chenopodium quinoa HOM05D001338 ORTHO05D001239 9.9e-16 86.7 83 49.4
HanXRQChr10g0286761 Helianthus annuus HOM05D001338 ORTHO05D001239 1.7e-15 85.9 76 55.3
CARHR116070 Cardamine hirsuta HOM05D001338 ORTHO05D001239 2.2e-15 85.5 66 60.6
Oeu063768.1 Olea europaea HOM05D001338 ORTHO05D001239 2.2e-15 85.5 73 57.5
TWI31G1167 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 4.9e-15 84.3 73 56.2
PSO724G1235 Papaver somniferum HOM05D001338 ORTHO05D001239 6.4e-15 84.0 84 46.4
BcaB01g01626 Brassica carinata HOM05D001338 ORTHO05D001239 1.1e-14 83.2 79 53.2
FvH4_1g10851 Fragaria vesca HOM05D001338 ORTHO05D001239 1.1e-14 83.2 82 47.6
Oeu054316.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-14 83.2 79 53.2
CARHR178380 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.4e-14 82.8 66 57.6
SpUn0060_0030 Schrenkiella parvula HOM05D001338 ORTHO05D001239 1.4e-14 82.8 75 54.7
C09p32850 Brassica napus HOM05D001338 ORTHO05D001239 1.9e-14 82.4 77 50.6
EL10Ac9g22457 Beta vulgaris HOM05D001338 ORTHO05D001239 3.2e-14 81.6 79 53.2
RcHm_v2.0_Chr3g0480551 Rosa chinensis HOM05D001338 ORTHO05D001239 3.2e-14 81.6 78 57.7
RcHm_v2.0_Chr4g0435271 Rosa chinensis HOM05D001338 ORTHO05D001239 3.2e-14 81.6 78 57.7
Glyma.14G107400 Glycine max HOM05D001338 ORTHO05D001239 7.1e-14 80.5 76 48.7
TWI74G1243 Tripterygium wilfordii HOM05D000044 ORTHO05D000051 7.1e-14 80.5 66 57.6
Oeu000170.1 Olea europaea HOM05D001338 ORTHO05D001239 1.2e-13 79.7 67 58.2
PSO170G4402 Papaver somniferum HOM05D001338 ORTHO05D001239 1.6e-13 79.3 87 42.5
PSO782G4201 Papaver somniferum HOM05D001175 ORTHO05D003020 1.6e-13 79.3 61 67.2
TWI31G0800 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 2.1e-13 79.0 62 62.9
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 2.7e-13 78.6 67 61.2
HanXRQChr03g0070731 Helianthus annuus HOM05D001338 ORTHO05D001239 2.7e-13 78.6 67 61.2
TWI74G0662 Tripterygium wilfordii HOM05D001338 ORTHO05D001239 2.7e-13 78.6 62 61.3
Oeu057453.1 Olea europaea HOM05D001338 ORTHO05D001239 6.0e-13 77.4 77 50.6
PSO017G0847 Papaver somniferum HOM05D001338 ORTHO05D001239 6.0e-13 77.4 79 45.6
RcHm_v2.0_Chr5g0031951 Rosa chinensis HOM05D001338 ORTHO05D001239 7.8e-13 77.0 72 59.7
RcHm_v2.0_Chr1g0321921 Rosa chinensis HOM05D001338 ORTHO05D001239 2.3e-12 75.5 78 55.1
AT2G16040 Arabidopsis thaliana HOM05D001338 ORTHO05D001239 3.0e-12 75.1 56 62.5
Sp3g26320 Schrenkiella parvula HOM05D001338 ORTHO05D001239 3.9e-12 74.7 58 60.3
CANSAT01G0302 Cannabis sativa HOM05D001338 ORTHO05D001239 1.1e-11 73.2 65 55.4
HanXRQChr11g0321031 Helianthus annuus HOM05D001338 ORTHO05D001239 1.1e-11 73.2 67 56.7
Oeu052286.1 Olea europaea HOM05D001338 ORTHO05D001239 1.1e-11 73.2 62 56.5
Gorai.010G072400 Gossypium raimondii HOM05D001338 ORTHO05D001239 1.9e-11 72.4 70 52.9
Oeu049829.1 Olea europaea HOM05D001338 ORTHO05D001239 1.9e-11 72.4 59 59.3
Oeu025048.1 Olea europaea HOM05D001338 ORTHO05D001239 7.3e-11 70.5 63 55.6
EL10Ac3g06627 Beta vulgaris HOM05D001338 ORTHO05D001239 1.3e-10 69.7 60 55.0
CARHR098000 Cardamine hirsuta HOM05D001338 ORTHO05D001239 1.3e-10 69.7 59 62.7
RcHm_v2.0_Chr2g0137341 Rosa chinensis HOM05D001338 ORTHO05D001239 1.3e-10 69.7 54 61.1
AL3G19600 Arabidopsis lyrata HOM05D001338 ORTHO05D001239 2.8e-10 68.6 77 49.4
EL10Ac1g02359 Beta vulgaris HOM05D001338 ORTHO05D001239 1.1e-09 66.6 69 47.8
CiPaw.15G122600 Carya illinoinensis HOM05D001338 ORTHO05D001239 1.8e-09 65.9 67 50.7
CANSAT41G0002 Cannabis sativa HOM05D000027 ORTHO05D000066 2.4e-09 65.5 60 50.0
PSO017G2034 Papaver somniferum HOM05D001338 ORTHO05D001239 2.4e-09 65.5 76 44.7
PSO781G0133 Papaver somniferum HOM05D001338 ORTHO05D001239 2.4e-09 65.5 56 58.9
CSS0026998 Camellia sinensis var. sinensis HOM05D001338 ORTHO05D001239 4.0e-09 64.7 54 55.6
Oeu005479.1 Olea europaea HOM05D001338 ORTHO05D001239 4.0e-09 64.7 63 50.8
AUR62037832 Chenopodium quinoa HOM05D001338 ORTHO05D001239 5.3e-09 64.3 77 48.1
PSO339G5254 Papaver somniferum HOM05D001338 ORTHO05D001239 9.0e-09 63.5 82 41.5
RcHm_v2.0_Chr6g0263321 Rosa chinensis HOM05D001338 ORTHO05D001239 9.0e-09 63.5 45 66.7
SpUn0007_0210 Schrenkiella parvula HOM05D001338 ORTHO05D001239 9.0e-09 63.5 47 66.0
Sp6g08540 Schrenkiella parvula HOM05D001338 ORTHO05D001239 2.6e-08 62.0 54 57.4
PSO210G1253 Papaver somniferum HOM05D001338 ORTHO05D001239 9.9e-08 60.1 52 59.6
Atru.chr1.2150 Acer truncatum HOM05D002861 ORTHO05D003104 4.9e-07 57.8 46 58.7
Oeu064839.1 Olea europaea HOM05D001338 ORTHO05D001239 2.4e-06 55.5 45 62.2


User provided reference genes

Program Settings