Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 5.8e-83 310.8 157 100.0
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 5.1e-47 191.4 131 76.3
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 8.8e-47 190.7 153 68.6
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 3.1e-44 182.2 97 89.7
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 1.2e-43 180.3 98 91.8
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 3.8e-42 175.3 97 84.5
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 3.8e-42 175.3 97 86.6
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 3.8e-42 175.3 97 86.6
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 3.8e-42 175.3 97 86.6
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 3.8e-42 175.3 97 86.6
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 5.0e-42 174.9 97 84.5
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 8.5e-42 174.1 97 85.6
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 1.1e-38 163.7 98 81.6
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 1.5e-38 163.3 98 81.6
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 1.5e-38 163.3 98 80.6
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 2.0e-38 162.9 98 81.6
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 2.6e-38 162.5 98 80.6
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 2.6e-38 162.5 98 80.6
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 1.7e-37 159.8 97 76.3
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 1.1e-36 157.1 97 73.2
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 1.4e-36 156.8 97 74.2
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 2.4e-36 156.0 96 75.0
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 3.1e-36 155.6 98 76.5
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 3.1e-36 155.6 97 74.2
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 5.3e-36 154.8 93 75.3
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 9.1e-36 154.1 97 72.2
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 1.2e-35 153.7 92 75.0
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 2.0e-35 152.9 98 75.5
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 2.6e-35 152.5 98 74.5
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 4.5e-35 151.8 97 73.2
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 5.9e-35 151.4 92 75.0
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 5.9e-35 151.4 98 75.5
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 1.0e-34 150.6 96 69.8
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 1.3e-34 150.2 83 85.5
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 1.7e-34 149.8 94 72.3
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 1.7e-34 149.8 88 76.1
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 5.0e-34 148.3 96 72.9
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 6.5e-34 147.9 96 69.8
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 6.5e-34 147.9 101 68.3
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 8.5e-34 147.5 96 72.9
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 8.5e-34 147.5 101 66.3
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 8.5e-34 147.5 101 66.3
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 8.5e-34 147.5 101 66.3
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 1.1e-33 147.1 92 72.8
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.1e-33 147.1 91 72.5
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 1.1e-33 147.1 91 72.5
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 1.1e-33 147.1 91 72.5
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 2.5e-33 146.0 101 66.3
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 4.2e-33 145.2 92 75.0
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 4.2e-33 145.2 94 72.3
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 5.5e-33 144.8 91 75.8
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 9.4e-33 144.1 98 68.4
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 1.2e-32 143.7 92 70.7
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 1.6e-32 143.3 93 68.8
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 2.7e-32 142.5 96 66.7
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 2.7e-32 142.5 98 69.4
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 2.7e-32 142.5 93 72.0
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 2.7e-32 142.5 91 73.6
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 4.7e-32 141.7 92 69.6
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 4.7e-32 141.7 93 69.9
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 4.7e-32 141.7 98 68.4
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 6.1e-32 141.4 97 63.9
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 8.0e-32 141.0 99 67.7
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 2.3e-31 139.4 93 67.7
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 3.0e-31 139.0 92 70.7
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 4.0e-31 138.7 91 70.3
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 6.7e-31 137.9 94 66.0
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 6.7e-31 137.9 97 69.1
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 8.8e-31 137.5 98 65.3
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 1.2e-30 137.1 92 68.5
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 1.2e-30 137.1 92 70.7
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 1.2e-30 137.1 103 63.1
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 1.2e-30 137.1 98 64.3
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 1.2e-30 137.1 98 64.3
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 2.0e-30 136.3 91 67.0
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 4.4e-30 135.2 95 67.4
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 5.7e-30 134.8 93 68.8
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 7.5e-30 134.4 80 72.5
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 1.3e-29 133.7 98 65.3
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 2.2e-29 132.9 80 75.0
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 2.2e-29 132.9 92 66.3
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 2.2e-29 132.9 91 69.2
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.2e-29 132.9 89 70.8
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 2.8e-29 132.5 98 63.3
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 3.7e-29 132.1 95 64.2
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 4.8e-29 131.7 94 64.9
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 4.8e-29 131.7 91 63.7
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 6.3e-29 131.3 89 75.3
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 2.4e-28 129.4 95 63.2
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 3.1e-28 129.0 99 64.6
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 4.1e-28 128.6 98 63.3
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 5.3e-28 128.3 93 66.7
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 5.3e-28 128.3 90 65.6
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 7.0e-28 127.9 81 74.1
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 1.6e-27 126.7 93 62.4
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 2.0e-27 126.3 125 54.4
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 3.5e-27 125.6 84 69.0
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 3.5e-27 125.6 91 62.6
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 4.5e-27 125.2 85 68.2
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 1.0e-26 124.0 97 60.8
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 5.0e-26 121.7 104 57.7
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 1.9e-25 119.8 82 70.7
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 5.5e-25 118.2 80 68.8
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 1.8e-23 113.2 78 69.2
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 2.2e-21 106.3 104 52.9
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 2.8e-21 105.9 62 75.8
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 5.4e-20 101.7 80 61.2
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 2.9e-18 95.9 71 62.0
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 6.5e-18 94.7 79 57.0
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 1.2e-16 90.5 87 51.7
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 2.8e-16 89.4 79 53.2
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 1.1e-12 77.4 114 43.0
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 9.2e-12 74.3 67 55.2
SHI07946 Sapria himalayana HOM05D006709 ORTHO05D008329 3.5e-11 72.4 50 66.0
DCAR_023021 Daucus carota HOM05D006709 ORTHO05D008329 2.9e-10 69.3 63 54.0
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 7.3e-09 64.7 41 63.4
CBR_g27877 Chara braunii HOM05D006709 ORTHO05D008329 2.3e-07 59.7 53 49.1
SalBow8G3647 Salvia bowleyana HOM05D006709 ORTHO05D008329 4.0e-07 58.9 38 57.9


User provided reference genes

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