Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.2e-83 311.2 184 100.0
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.6e-69 264.6 184 92.4
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-67 260.4 188 88.8
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 6.8e-67 257.7 188 88.8
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-65 251.9 197 84.3
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-64 250.4 195 84.1
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-63 246.9 202 80.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-63 246.9 202 80.7
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-61 240.4 189 83.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-61 240.0 208 78.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.5e-61 240.0 194 83.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-61 239.2 193 81.3
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 9.6e-61 237.3 198 78.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 9.6e-61 237.3 198 79.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.4e-59 232.6 215 74.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 5.8e-58 228.0 211 74.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 9.9e-58 227.3 188 79.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 9.9e-58 227.3 183 82.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.7e-57 226.5 184 82.6
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-56 223.8 183 80.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-56 222.2 206 75.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.7e-55 219.2 205 70.7
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.0e-54 215.7 172 80.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-53 211.8 180 80.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.8e-52 209.1 188 72.3
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.8e-52 208.4 186 66.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.4e-48 196.8 179 76.0
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.2e-48 195.7 187 73.8
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.2e-47 193.7 186 73.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.7e-47 192.6 181 71.3
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.3e-46 190.3 194 66.0
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.0e-46 189.1 180 74.4
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 6.9e-43 177.9 180 53.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.0e-43 177.6 199 63.8
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-42 176.0 182 62.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.2e-41 172.9 194 58.2
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.9e-41 172.6 188 51.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.9e-40 169.9 184 57.6
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-40 169.5 180 52.2
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-40 169.5 180 52.2
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-40 169.1 182 61.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 5.5e-40 168.3 184 57.1
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 5.5e-40 168.3 205 59.0
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-39 167.2 189 66.7
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.6e-39 166.8 182 57.7
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.1e-39 166.4 196 57.7
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.9e-39 164.5 187 54.5
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 7.9e-39 164.5 195 58.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 7.9e-39 164.5 184 62.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.0e-38 164.1 190 60.5
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.0e-38 164.1 190 60.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-38 163.7 182 62.1
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.3e-38 163.7 211 55.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.8e-38 163.3 196 50.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 5.1e-38 161.8 197 51.3
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.1e-38 161.8 182 57.1
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-38 161.4 182 61.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.7e-38 161.0 197 53.8
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.1e-37 160.6 192 53.1
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-37 160.2 207 59.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.5e-37 160.2 192 63.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.9e-37 159.8 189 52.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 3.3e-37 159.1 182 60.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 7.4e-37 157.9 212 53.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 7.4e-37 157.9 212 53.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 7.4e-37 157.9 202 58.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 9.6e-37 157.5 198 52.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.3e-36 157.1 187 55.6
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.6e-36 156.8 186 64.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-36 156.4 180 50.0
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-36 156.4 180 50.0
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.1e-36 156.4 180 50.0
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.8e-36 156.0 198 57.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.7e-36 155.6 200 57.0
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-36 155.2 167 53.9
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.8e-36 155.2 201 56.2
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 4.8e-36 155.2 184 63.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 4.8e-36 155.2 190 45.8
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 8.2e-36 154.5 205 61.0
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 8.2e-36 154.5 195 61.5
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.4e-35 153.7 187 58.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.4e-35 153.7 197 44.7
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.8e-35 153.3 207 55.6
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.8e-35 153.3 193 51.3
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.4e-35 152.9 210 58.6
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.1e-35 152.1 191 53.9
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 6.9e-35 151.4 214 56.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 9.0e-35 151.0 181 53.6
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.0e-34 149.8 196 45.9
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.0e-34 149.8 188 51.6
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.6e-34 149.4 189 61.9
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 4.5e-34 148.7 190 46.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.7e-33 146.7 191 51.8
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.8e-33 145.6 195 61.5
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.0e-33 145.2 192 47.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 5.0e-33 145.2 219 49.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 6.5e-33 144.8 211 55.9
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 8.4e-33 144.4 219 49.3
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 8.4e-33 144.4 179 46.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.4e-32 143.7 209 49.3
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.4e-32 143.7 213 54.5
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.4e-32 143.7 182 57.7
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.9e-32 143.3 220 42.7
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 2.5e-32 142.9 196 52.6
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 4.2e-32 142.1 238 50.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.5e-32 141.7 179 51.4
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 5.5e-32 141.7 189 60.8
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 7.2e-32 141.4 221 41.2
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 9.3e-32 141.0 209 51.2
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 9.3e-32 141.0 185 56.2
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.2e-31 140.6 183 45.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.2e-31 140.6 199 50.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.1e-31 139.8 190 58.9
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 4.6e-31 138.7 180 62.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 4.6e-31 138.7 205 45.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 4.6e-31 138.7 199 41.2
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 6.1e-31 138.3 179 44.7
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 6.1e-31 138.3 185 62.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.8e-30 136.7 197 54.8
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.8e-30 136.7 182 42.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 3.9e-30 135.6 198 51.0
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 3.9e-30 135.6 186 53.2
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 3.9e-30 135.6 196 58.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-30 134.8 167 62.9
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 6.7e-30 134.8 167 62.9
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.7e-30 134.4 217 39.6
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 8.7e-30 134.4 185 44.9
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 8.7e-30 134.4 202 47.0
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.1e-29 134.0 237 50.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-29 134.0 196 58.7
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.1e-29 134.0 193 58.0
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.9e-29 133.3 206 47.1
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-29 133.3 191 44.5
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-29 132.9 167 63.5
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-29 132.9 167 63.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.5e-29 132.9 198 53.0
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.6e-28 130.2 199 55.8
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.8e-28 129.4 205 49.8
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.8e-28 129.4 207 40.1
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.8e-28 128.6 233 51.1
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 8.2e-28 127.9 194 57.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 8.2e-28 127.9 182 43.4
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.1e-27 127.5 218 38.5
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.8e-27 126.7 222 38.7
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 5.3e-27 125.2 233 44.2
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.7e-26 121.3 203 53.2
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 1.3e-25 120.6 206 36.9
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.2e-25 119.8 131 64.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.0e-25 118.6 179 45.8
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 6.5e-25 118.2 158 43.0
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.4e-24 117.1 211 35.5
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.5e-24 116.3 234 35.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.2e-24 114.8 177 42.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 3.6e-23 112.5 202 40.6
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 6.1e-23 111.7 167 59.3
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.9e-23 111.3 220 48.6
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.3e-21 105.9 175 48.0
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 5.7e-21 105.1 173 44.5
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.4e-19 100.5 186 36.0
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.0e-18 96.7 109 49.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.0e-17 94.4 106 78.3
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.7e-17 93.6 220 35.0
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 7.9e-15 84.7 165 32.7
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.0e-14 84.3 221 29.9
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-14 83.6 144 36.1
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.3e-14 83.2 223 30.5
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.7e-12 75.9 114 43.0
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.4e-11 73.9 91 44.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 4.1e-11 72.4 189 30.2
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.1e-11 72.4 194 43.3
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 1.6e-10 70.5 194 42.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-10 70.1 190 41.6
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.5e-09 65.1 139 28.1
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 1.2e-07 60.8 67 47.8
Pp3c16_12300 Physcomitrium patens HOM05D013579 ORTHO05D001508 4.7e-07 58.9 60 46.7
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 4.7e-07 58.9 42 57.1
Mapoly0029s0076 Marchantia polymorpha HOM05D013579 ORTHO05D015305 5.2e-06 55.5 64 42.2
Pp3c5_5250 Physcomitrium patens HOM05D013579 ORTHO05D015305 8.8e-06 54.7 45 53.3
Pp3c6_24870 Physcomitrium patens HOM05D013579 ORTHO05D015305 8.8e-06 54.7 45 46.7
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.8e-06 54.7 162 26.5


User provided reference genes

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