Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR126960 Cardamine hirsuta HOM05D003322 ORTHO05D004228 4.4e-33 144.1 74 100.0
Aa31LG5G4180 Aethionema arabicum HOM05D003322 ORTHO05D004228 1.7e-21 105.5 53 100.0
AL4G28590 Arabidopsis lyrata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
AT2G33040 Arabidopsis thaliana HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaB01g03961 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaB02g10520 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaB06g28649 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaC01g05883 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaC02g07863 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BcaC02g11376 Brassica carinata HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
A03p18380 Brassica napus HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
A04p25420 Brassica napus HOM05D000074 ORTHO05D000696 5.1e-21 104.0 53 98.1
A05p12580 Brassica napus HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
C03p21450 Brassica napus HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
C04p16450 Brassica napus HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
C04p62560 Brassica napus HOM05D000074 ORTHO05D000696 5.1e-21 104.0 53 98.1
BolC3t14530H Brassica oleracea HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BolC4t23195H Brassica oleracea HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BolC4t27737H Brassica oleracea HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BraA03t11101Z Brassica rapa HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BraA04t18045Z Brassica rapa HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
BraA05t20195Z Brassica rapa HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
Carub.0004s1452 Capsella rubella HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
Thhalv10016929m.g Eutrema salsugineum HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
Sp4g15380 Schrenkiella parvula HOM05D003322 ORTHO05D004228 5.1e-21 104.0 53 98.1
COL.COLO4_06862 Corchorus olitorius HOM05D003322 ORTHO05D004228 3.3e-20 101.3 53 94.3
Lj5A435G20 Lonicera japonica HOM05D003322 ORTHO05D004228 5.6e-20 100.5 57 87.7
Phvul.009G191400 Phaseolus vulgaris HOM05D003322 ORTHO05D004228 7.3e-20 100.1 53 94.3
VMungo1309G2770 Vigna mungo HOM05D003322 ORTHO05D004228 7.3e-20 100.1 52 98.1
Glyma.04G162800 Glycine max HOM05D003322 ORTHO05D004228 1.6e-19 99.0 52 96.2
arahy.Tifrunner.gnm1.ann1.0NDH2Q Arachis hypogaea HOM05D003322 ORTHO05D004228 2.1e-19 98.6 53 92.5
arahy.Tifrunner.gnm1.ann1.54SFA6 Arachis hypogaea HOM05D003322 ORTHO05D004228 2.1e-19 98.6 53 92.5
MBI11_g00916_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 2.1e-19 98.6 53 94.3
CAN.G1228.27 Capsicum annuum HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
Lalb_Chr11g0061621 Lupinus albus HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
Nitab4.5_0003660g0050 Nicotiana tabacum HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
Nitab4.5_0005072g0050 Nicotiana tabacum HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
Sed0007546 Sechium edule HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 94.3
Solyc03g115110.4 Solanum lycopersicum HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
Sopen03g034180 Solanum pennellii HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
PGSC0003DMG400024638 Solanum tuberosum HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
TWI60G0212 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 2.8e-19 98.2 53 92.5
CSS0041329 Camellia sinensis var. sinensis HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Cfa019330 Carpinus fangiana HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
CiPaw.11G053100 Carya illinoinensis HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
CiPaw.11G053200 Carya illinoinensis HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
ClCG04G011820 Citrullus lanatus HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Haze_07721 Corylus avellana HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
MELO3C002027.2 Cucumis melo HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
DCAR_002146 Daucus carota HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
DCAR_023345 Daucus carota HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
ECA233G0034 Erigeron canadensis HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Lsat_1_v5_gn_8_121700 Lactuca sativa HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Nn8g40879 Nelumbo nucifera HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Prupe.5G204800 Prunus persica HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 90.6
QL10p019470 Quercus lobata HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 90.6
vmacro17609 Vaccinium macrocarpon HOM05D003322 ORTHO05D004228 3.6e-19 97.8 53 92.5
Lj5A102G94 Lonicera japonica HOM05D003322 ORTHO05D004228 4.8e-19 97.4 53 90.6
Manes.06G084900 Manihot esculenta HOM05D003322 ORTHO05D004228 4.8e-19 97.4 53 92.5
Manes.14G085400 Manihot esculenta HOM05D003322 ORTHO05D004228 4.8e-19 97.4 53 92.5
PGR083G0152 Punica granatum HOM05D003322 ORTHO05D004228 4.8e-19 97.4 53 92.5
Hma1.2p1_0060F.1_g033120 Hydrangea macrophylla HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 92.5
MD06G1202600 Malus domestica HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
Oeu014404.1 Olea europaea HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
Oeu061163.1 Olea europaea HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
THA.LOC104801002 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 6.2e-19 97.1 54 90.7
Thecc.03G101400 Theobroma cacao HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
TWI81G0037 Tripterygium wilfordii HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
GSVIVG01007868001 Vitis vinifera HOM05D003322 ORTHO05D004228 6.2e-19 97.1 53 90.6
CANSAT80G2201 Cannabis sativa HOM05D003322 ORTHO05D004228 8.1e-19 96.7 53 90.6
HanXRQChr12g0374611 Helianthus annuus HOM05D003322 ORTHO05D004228 8.1e-19 96.7 53 90.6
HanXRQChr12g0374621 Helianthus annuus HOM05D003322 ORTHO05D004228 8.1e-19 96.7 53 90.6
MD14G1211800 Malus domestica HOM05D003322 ORTHO05D004228 8.1e-19 96.7 53 90.6
Nn4g23423 Nelumbo nucifera HOM05D003322 ORTHO05D004228 8.1e-19 96.7 52 92.3
Potri.012G066100 Populus trichocarpa HOM05D003322 ORTHO05D004228 8.1e-19 96.7 53 90.6
CsaV3_1G005960 Cucumis sativus L. HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 90.6
Glyma.06G203200 Glycine max HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 90.6
Gohir.A12G182500 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 92.5
Gohir.D12G185600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 92.5
Gorai.008G199000 Gossypium raimondii HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 92.5
Peaxi162Scf00201g00237 Petunia axillaris HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 90.6
Sabra15G0083800 Salix brachista HOM05D003322 ORTHO05D004228 1.1e-18 96.3 53 90.6
THA.LOC104826136 Tarenaya hassleriana HOM05D003322 ORTHO05D004228 1.1e-18 96.3 54 90.7
MSTRG.22966 Avicennia marina HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 90.6
FAN08G0721 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
FAN13G2646 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
FAN18G2096 Fragaria x ananassa HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
MBI13_g34044_MAGBIO Magnolia biondii HOM05D003322 ORTHO05D004228 1.4e-18 95.9 67 74.6
Peaxi162Scf00702g00035 Petunia axillaris HOM05D003322 ORTHO05D004228 1.4e-18 95.9 51 94.1
RcHm_v2.0_Chr7g0183071 Rosa chinensis HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
Sc10g0009720 Simmondsia chinensis HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
SGA_v2.0_scaffold25G10961 Striga asiatica HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 88.7
TAR629G0740 Trochodendron aralioides HOM05D003322 ORTHO05D004228 1.4e-18 95.9 53 90.6
Ciclev10021169m.g Citrus clementina HOM05D003322 ORTHO05D004228 1.8e-18 95.5 53 88.7
Nitab4.5_0009401g0070 Nicotiana tabacum HOM05D003322 ORTHO05D004228 1.8e-18 95.5 53 88.7
Rhsim08G0146100 Rhododendron simsii HOM05D003322 ORTHO05D004228 1.8e-18 95.5 51 94.1
Atru.chr9.581 Acer truncatum HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 88.7
EL10Ac5g11127 Beta vulgaris HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 88.7
Migut.D01664 Erythranthe guttata HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 90.6
Eucgr.B00589 Eucalyptus grandis HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 90.6
Gohir.A07G068700 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.4e-18 95.1 52 92.3
Gohir.D07G073200 Gossypium hirsutum HOM05D003322 ORTHO05D004228 2.4e-18 95.1 52 92.3
Gorai.001G077400 Gossypium raimondii HOM05D003322 ORTHO05D004228 2.4e-18 95.1 52 92.3
SHI27070 Sapria himalayana HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 88.7
Hund09909 Selenicereus undatus HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 90.6
Zm00001eb400220 Zea mays HOM05D003322 ORTHO05D004228 2.4e-18 95.1 53 90.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.1e-18 94.7 53 88.7
Aqoxy6G00786 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 88.7
CDE02G3519 Ceratophyllum demersum HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 90.6
Gohir.A03G070000 Gossypium hirsutum HOM05D003322 ORTHO05D004228 3.1e-18 94.7 63 79.4
Gohir.D03G096600 Gossypium hirsutum HOM05D003322 ORTHO05D004228 3.1e-18 94.7 58 82.8
Gorai.003G101200 Gossypium raimondii HOM05D003322 ORTHO05D004228 3.1e-18 94.7 58 82.8
Lj1g0009894 Lotus japonicus HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 92.5
Medtr4g129790 Medicago truncatula HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 92.5
Potri.015G057700 Populus trichocarpa HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 88.7
SGA_v2.0_scaffold28G11757 Striga asiatica HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 88.7
TPR.G24877 Trifolium pratense HOM05D003322 ORTHO05D004228 3.1e-18 94.7 53 92.5
Aqoxy6G02351 Aquilegia oxysepala HOM05D003322 ORTHO05D004228 4.0e-18 94.4 66 75.8
FvH4_5g13860 Fragaria vesca HOM05D003322 ORTHO05D004228 4.0e-18 94.4 53 86.8
Sc12g0006660 Simmondsia chinensis HOM05D003322 ORTHO05D004228 4.0e-18 94.4 54 87.0
ATR0730G108 Amborella trichopoda HOM05D003322 ORTHO05D004228 5.3e-18 94.0 53 88.7
Haze_05918 Corylus avellana HOM05D003322 ORTHO05D007812 5.3e-18 94.0 54 87.0
Duzib068G1237 Durio zibethinus HOM05D003322 ORTHO05D004228 5.3e-18 94.0 53 88.7
Duzib205G0199 Durio zibethinus HOM05D003322 ORTHO05D004228 5.3e-18 94.0 53 88.7
Nitab4.5_0001485g0170 Nicotiana tabacum HOM05D003322 ORTHO05D004228 5.3e-18 94.0 53 86.8
unitig_46.g18457 Utricularia gibba HOM05D003322 ORTHO05D004228 6.9e-18 93.6 53 88.7
AUR62021565 Chenopodium quinoa HOM05D003322 ORTHO05D004228 9.0e-18 93.2 53 84.9
Ca_21165_v3 Cicer arietinum L. HOM05D003322 ORTHO05D004228 9.0e-18 93.2 49 98.0
Cc03_g13130 Coffea canephora HOM05D003322 ORTHO05D004228 9.0e-18 93.2 53 86.8
Psat0s2642g0080 Pisum sativum HOM05D003322 ORTHO05D004228 9.0e-18 93.2 49 98.0
PSO017G5003 Papaver somniferum HOM05D003322 ORTHO05D004228 1.2e-17 92.8 53 86.8
PSO478G0061 Papaver somniferum HOM05D003322 ORTHO05D004228 1.2e-17 92.8 53 86.8
Peaxi162Scf00013g00630 Petunia axillaris HOM05D003322 ORTHO05D004228 1.2e-17 92.8 53 88.7
QL10p019459 Quercus lobata HOM05D003322 ORTHO05D004228 1.5e-17 92.4 53 86.8
SEGI_10820 Sequoiadendron giganteum HOM05D003322 ORTHO05D004228 1.5e-17 92.4 53 84.9
Dinv22783 Davidia involucrata HOM05D003322 ORTHO05D004228 3.4e-17 91.3 53 83.0
HPP92_009478 Vanilla planifolia HOM05D003322 ORTHO05D004228 3.4e-17 91.3 53 86.8
Mapoly0062s0010 Marchantia polymorpha HOM05D003322 ORTHO05D004228 4.5e-17 90.9 53 83.0
Mapoly0062s0085 Marchantia polymorpha HOM05D003322 ORTHO05D004228 4.5e-17 90.9 53 83.0
Pp3c18_8580 Physcomitrium patens HOM05D003322 ORTHO05D004228 4.5e-17 90.9 56 82.1
Pp3c19_11630 Physcomitrium patens HOM05D003322 ORTHO05D004228 4.5e-17 90.9 56 82.1
Pp3c21_11700 Physcomitrium patens HOM05D003322 ORTHO05D004228 4.5e-17 90.9 56 82.1
Lalb_Chr08g0246391 Lupinus albus HOM05D003322 ORTHO05D004228 5.8e-17 90.5 49 91.8
Os10g0320400 Oryza sativa ssp. japonica HOM05D003322 ORTHO05D004228 5.8e-17 90.5 66 75.8
Zm00001eb008610 Zea mays HOM05D003322 ORTHO05D004228 1.7e-16 89.0 49 89.8
SalBow5G1734 Salvia bowleyana HOM05D003322 ORTHO05D004228 8.4e-16 86.7 49 87.8
Dinv17411 Davidia involucrata HOM05D003322 ORTHO05D004228 1.1e-15 86.3 53 81.1
AUR62008524 Chenopodium quinoa HOM05D003322 ORTHO05D004228 1.4e-15 85.9 49 85.7
Sopen05g014110 Solanum pennellii HOM05D000392 ORTHO05D002065 1.9e-15 85.5 47 89.4
Dinv33826 Davidia involucrata HOM05D003322 ORTHO05D004228 7.1e-15 83.6 49 83.7
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 1.6e-14 82.4 53 77.4
Lj9C471G2 Lonicera japonica HOM05D003322 ORTHO05D004228 7.9e-14 80.1 53 77.4
Pp3c19_5760 Physcomitrium patens HOM05D003322 ORTHO05D004228 1.3e-13 79.3 53 75.5
SMO367G0098 Selaginella moellendorffii HOM05D003322 ORTHO05D004228 2.3e-13 78.6 47 83.0
AagrBONN_evm.TU.Sc2ySwM_344.3139 Anthoceros agrestis HOM05D003322 ORTHO05D004228 4.3e-12 74.3 53 73.6
Haze_14434 Corylus avellana HOM05D003322 ORTHO05D004228 4.3e-12 74.3 41 90.2
AagrBONN_evm.TU.Sc2ySwM_117.1998 Anthoceros agrestis HOM05D003322 ORTHO05D004228 3.7e-11 71.2 54 66.7
Sopen05g014100 Solanum pennellii HOM05D003322 ORTHO05D004228 3.1e-10 68.2 36 88.9
PRCOL_00000458 Prasinoderma coloniale HOM05D003322 ORTHO05D004228 5.8e-09 63.9 49 61.2
Cre15.g635850 Chlamydomonas reinhardtii HOM05D003322 ORTHO05D004228 7.6e-09 63.5 56 55.4
MCO01G597 Micromonas commoda HOM05D003322 ORTHO05D004228 1.3e-08 62.8 56 64.3
Ah.11g047800 Amaranthus hybridus HOM05D003322 ORTHO05D004228 6.5e-08 60.5 34 79.4


User provided reference genes

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