Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.1e-170 603.2 314 100.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.1e-149 533.5 289 94.1
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 2.7e-148 528.9 290 94.1
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 3.5e-148 528.5 290 93.4
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 6.1e-148 527.7 299 91.0
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 6.3e-145 517.7 292 91.1
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.4e-144 516.5 292 92.1
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.3e-144 514.6 292 90.1
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 6.9e-144 514.2 292 91.1
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 2.0e-143 512.7 292 91.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 3.4e-143 511.9 292 91.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.4e-143 511.9 292 89.4
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 1.3e-142 510.0 292 90.1
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.3e-142 510.0 292 90.1
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.1e-138 496.9 315 82.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 2.9e-134 482.3 354 74.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 5.5e-133 478.0 311 81.7
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.8e-123 446.4 292 77.7
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.0e-103 379.8 297 66.3
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 5.0e-102 375.2 295 66.4
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.6e-100 370.2 299 64.9
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 4.7e-100 368.6 294 65.6
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.0e-99 367.5 294 64.6
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.0e-99 365.5 295 64.7
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.3e-97 360.5 295 64.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 2.2e-97 359.8 295 62.7
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 3.7e-97 359.0 295 62.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 6.4e-97 358.2 295 62.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 6.4e-97 358.2 295 63.7
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-96 357.5 295 63.4
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.1e-96 357.5 298 62.4
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-96 355.9 200 91.5
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.1e-96 355.5 317 60.3
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 2.0e-95 353.2 294 62.6
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.0e-94 350.9 295 62.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.0e-94 350.9 295 62.0
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.9e-94 349.0 295 63.4
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 6.6e-94 348.2 295 62.7
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 6.6e-94 348.2 292 62.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.1e-93 347.4 295 60.3
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-93 347.4 295 61.4
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.5e-93 347.1 295 62.0
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.9e-93 346.7 294 61.6
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.5e-93 346.3 298 61.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 2.5e-93 346.3 294 61.9
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 9.5e-93 344.4 291 60.8
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.6e-92 343.6 295 62.0
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 2.1e-92 343.2 295 61.0
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.8e-92 342.8 295 61.4
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.8e-91 340.1 294 58.5
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 3.1e-91 339.3 309 58.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 5.2e-91 338.6 295 59.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 8.9e-91 337.8 311 57.6
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.5e-90 337.0 307 58.6
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.0e-90 336.7 319 57.4
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.0e-90 336.7 294 59.9
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 9.8e-90 334.3 295 61.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.3e-89 334.0 298 57.4
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.9e-89 332.8 298 57.4
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 6.4e-89 331.6 306 57.5
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.4e-88 329.7 293 57.3
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 4.1e-88 328.9 293 59.4
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 2.7e-87 326.2 306 54.6
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 3.5e-87 325.9 296 58.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 4.6e-87 325.5 298 56.0
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 6.0e-87 325.1 299 57.2
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 6.0e-87 325.1 307 56.7
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.8e-87 324.7 293 58.4
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 5.0e-86 322.0 315 55.9
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 5.0e-86 322.0 293 57.3
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 5.0e-86 322.0 341 52.2
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.6e-86 321.6 294 58.2
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.5e-85 320.5 294 57.8
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.5e-85 319.7 294 58.2
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.6e-85 318.5 295 58.6
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 7.3e-85 318.2 280 59.3
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 1.2e-84 317.4 294 56.5
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.6e-84 317.0 293 57.0
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 2.8e-84 316.2 293 58.0
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 3.6e-84 315.8 299 54.5
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 6.2e-84 315.1 294 56.8
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.4e-83 313.9 295 56.3
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 6.8e-83 311.6 265 60.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.2e-82 310.8 324 52.8
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.5e-82 310.5 298 54.0
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.4e-82 309.3 295 55.3
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 4.4e-82 308.9 368 46.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.7e-81 307.0 312 52.9
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.2e-79 300.8 403 44.7
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.7e-79 299.7 257 59.9
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.9e-78 295.8 258 62.0
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.3e-77 292.7 267 59.9
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-76 289.3 260 60.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 4.7e-76 288.9 267 57.7
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.7e-76 288.9 226 65.5
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 6.8e-75 285.0 258 58.9
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.2e-74 284.3 256 57.8
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.2e-74 284.3 314 51.0
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 2.0e-74 283.5 415 43.1
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.6e-74 283.1 447 40.0
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.2e-73 280.0 296 49.3
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-73 280.0 280 54.6
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.9e-73 279.6 256 57.4
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 8.4e-73 278.1 288 52.8
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 8.4e-73 278.1 260 56.2
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 5.4e-72 275.4 257 58.8
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.5e-69 266.5 269 55.0
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 4.7e-68 262.3 330 46.4
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.2e-68 261.9 297 52.2
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 5.2e-67 258.8 288 49.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 8.9e-67 258.1 303 48.5
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 4.9e-65 252.3 308 46.4
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 9.3e-64 248.1 284 49.3
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 3.5e-63 246.1 307 45.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.1e-60 236.9 303 46.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 3.1e-59 233.0 265 48.3
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 6.9e-59 231.9 270 49.3
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-56 224.6 160 70.0
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 3.2e-56 223.0 203 57.1
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 4.6e-55 219.2 256 48.4
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 2.8e-52 209.9 158 66.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.2e-52 208.8 302 42.7
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 1.1e-51 208.0 209 59.3
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.1e-51 206.5 302 45.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 1.2e-47 194.5 206 52.4
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 7.9e-47 191.8 128 71.9
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 7.4e-45 185.3 222 46.8
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 7.4e-45 185.3 163 61.3
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 6.9e-43 178.7 290 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.2e-42 177.9 285 37.5
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.2e-42 177.9 291 37.8
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.2e-42 177.9 184 50.5
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.4e-42 176.4 165 56.4
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.3e-41 174.5 317 36.0
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.4e-35 153.7 110 69.1
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-33 148.3 115 63.5
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.0e-33 148.3 115 63.5
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.1e-32 144.8 104 69.2
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 2.5e-32 143.7 252 36.5
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.3e-32 141.7 148 54.7
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.3e-30 137.1 230 38.7
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.4e-24 117.9 131 45.0
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 2.6e-21 107.1 75 77.3
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-21 105.5 135 43.0
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 9.7e-21 105.1 69 82.6
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-20 104.4 75 76.0
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 2.8e-20 103.6 69 81.2
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 3.1e-19 100.1 70 82.9
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 6.5e-17 92.4 55 90.9
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 6.5e-17 92.4 55 90.9
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 3.6e-15 86.7 319 26.3
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 4.7e-15 86.3 86 50.0
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 1.1e-13 81.6 98 49.0
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 1.1e-13 81.6 98 49.0
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.4e-11 73.9 70 55.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 1.7e-09 67.8 65 55.4
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.9e-08 64.3 78 46.2
BolC6t36015H Brassica oleracea HOM05D004482 ORTHO05D005212 4.7e-07 59.7 38 81.6
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.0e-06 57.0 70 48.6


User provided reference genes

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