Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.3e-119 432.2 211 100.0
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.8e-87 326.2 194 79.9
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.3e-87 325.9 196 79.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.0e-87 325.1 174 87.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 6.8e-87 324.3 193 79.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.5e-86 323.2 197 78.7
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.5e-86 323.2 197 78.7
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.0e-86 322.8 197 78.2
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 2.0e-86 322.8 197 78.2
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 5.8e-86 321.2 197 77.7
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 9.9e-86 320.5 197 77.7
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 9.9e-86 320.5 197 77.7
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.9e-85 318.9 186 82.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 8.3e-85 317.4 193 78.2
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.2e-83 313.5 197 76.1
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.8e-83 310.8 196 75.0
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.9e-81 306.2 198 71.7
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 2.5e-81 305.8 172 83.1
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.1e-79 300.4 191 72.8
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.4e-79 300.1 198 71.2
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.8e-79 299.7 191 72.8
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.8e-79 299.7 197 73.6
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 5.2e-79 298.1 195 70.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 6.8e-79 297.7 197 70.1
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 8.9e-79 297.4 196 70.9
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 8.9e-79 297.4 197 70.1
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 8.9e-79 297.4 193 72.5
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.2e-78 297.0 198 69.2
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 1.2e-78 297.0 191 71.7
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 2.0e-78 296.2 193 71.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.0e-78 296.2 194 70.6
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.6e-78 295.8 195 70.8
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 2.6e-78 295.8 193 71.5
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 3.4e-78 295.4 193 71.5
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 3.4e-78 295.4 191 71.2
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.4e-78 295.4 193 71.5
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.4e-78 295.0 193 71.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 5.8e-78 294.7 197 69.5
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 5.8e-78 294.7 196 68.9
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 7.6e-78 294.3 197 70.1
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 9.9e-78 293.9 193 71.5
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 9.9e-78 293.9 195 70.3
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 9.9e-78 293.9 198 69.7
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 1.3e-77 293.5 197 69.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.3e-77 293.5 195 69.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.3e-77 293.5 191 71.2
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.2e-77 292.7 193 71.5
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.2e-77 292.7 191 71.7
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.9e-77 292.4 191 71.2
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-77 292.4 193 71.0
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.9e-77 292.4 172 76.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 3.8e-77 292.0 191 70.7
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.8e-77 292.0 194 70.1
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.9e-77 291.6 194 70.1
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 4.9e-77 291.6 202 68.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 6.4e-77 291.2 193 70.5
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.4e-76 290.0 199 69.8
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.9e-76 289.7 196 68.9
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.2e-76 288.9 191 69.1
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 4.2e-76 288.5 196 68.4
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 4.2e-76 288.5 191 70.7
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 5.4e-76 288.1 193 68.9
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 9.3e-76 287.3 190 70.0
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-75 286.6 191 70.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.7e-75 285.8 191 69.6
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 6.0e-75 284.6 196 66.3
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.0e-74 283.9 190 68.9
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.0e-74 283.9 199 67.8
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.3e-74 283.5 195 67.2
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 5.1e-74 281.6 191 68.1
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 5.1e-74 281.6 191 66.0
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 8.7e-74 280.8 195 68.7
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.1e-73 280.4 198 67.7
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.5e-73 279.3 191 67.0
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 4.3e-73 278.5 190 68.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 4.3e-73 278.5 200 65.0
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.6e-73 278.1 198 67.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.3e-72 276.9 184 70.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.1e-72 276.2 173 72.3
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 3.6e-72 275.4 196 66.8
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.1e-71 273.9 183 69.4
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.8e-71 273.1 188 69.1
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.8e-71 273.1 191 64.4
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 5.3e-71 271.6 195 66.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 9.0e-71 270.8 191 66.0
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 4.4e-70 268.5 178 69.1
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 4.4e-70 268.5 191 66.0
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.7e-69 266.5 178 68.5
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.0e-66 257.3 154 74.0
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.7e-66 256.5 177 67.8
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.9e-65 253.1 191 63.4
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 4.3e-65 251.9 196 60.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 6.9e-63 244.6 195 61.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.4e-62 242.3 190 61.1
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 9.9e-62 240.7 200 57.0
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 4.9e-61 238.4 162 67.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.2e-60 235.7 192 59.4
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.2e-60 235.7 192 58.9
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 6.0e-59 231.5 136 77.9
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 9.6e-57 224.2 179 63.1
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 9.0e-55 217.6 132 75.8
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 5.8e-54 214.9 133 75.9
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.0e-53 214.2 132 75.0
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.2e-53 213.0 193 54.9
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 8.4e-53 211.1 168 60.1
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 7.1e-52 208.0 127 74.8
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.3e-50 203.0 193 54.9
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 1.9e-49 199.9 178 56.2
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 1.3e-48 197.2 125 69.6
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.4e-47 193.7 114 77.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-46 189.9 197 48.2
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 9.3e-44 181.0 167 51.5
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 2.4e-39 166.4 118 65.3
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 6.9e-39 164.9 165 47.9
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.2e-36 156.0 99 73.7
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 5.5e-36 155.2 175 53.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.7e-32 143.7 172 40.7
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-31 141.0 223 37.2
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.5e-30 137.1 214 36.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 5.1e-26 122.1 86 64.0
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.5e-22 109.4 76 68.4
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 1.2e-19 100.9 62 69.4
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-19 100.5 191 33.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.1e-19 100.1 58 74.1
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.1e-17 94.4 85 54.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 2.0e-17 93.6 72 63.9
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 6.5e-13 78.6 63 54.0
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 7.2e-12 75.1 59 57.6
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 4.7e-11 72.4 37 81.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.0e-10 71.2 41 73.2
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 3.0e-10 69.7 94 43.6
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.5e-09 67.4 44 72.7
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 9.8e-09 64.7 46 67.4
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 8.3e-08 61.6 42 69.0


User provided reference genes

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