Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.2e-73 279.6 135 100.0
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.0e-40 168.3 122 71.3
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 6.9e-32 141.0 164 49.4
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 6.9e-32 141.0 164 50.0
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 8.9e-32 140.6 165 49.1
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 5.6e-26 121.3 156 44.9
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 5.6e-26 121.3 156 44.9
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.6e-25 119.8 156 44.2
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 6.2e-25 117.9 164 42.1
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 1.8e-24 116.3 156 42.9
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 2.4e-24 115.9 164 42.1
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.1e-24 115.5 166 42.2
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 5.3e-24 114.8 156 42.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 1.3e-22 110.2 156 41.0
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 1.7e-22 109.8 102 55.9
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 3.5e-20 102.1 124 43.5
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 6.0e-20 101.3 130 43.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.9e-20 100.9 164 37.8
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.0e-19 100.5 131 40.5
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.8e-19 99.8 129 42.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 2.3e-19 99.4 120 43.3
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.9e-19 98.6 71 60.6
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 5.1e-19 98.2 130 40.0
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 8.7e-19 97.4 114 48.2
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 1.1e-18 97.1 71 60.6
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.5e-18 96.7 130 39.2
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.5e-18 96.7 130 39.2
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 3.3e-18 95.5 129 41.1
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 3.3e-18 95.5 111 47.7
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.3e-18 95.1 126 40.5
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 5.6e-18 94.7 110 45.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 7.4e-18 94.4 69 59.4
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 9.6e-18 94.0 69 62.3
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 9.6e-18 94.0 66 63.6
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 9.6e-18 94.0 107 43.0
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-17 93.2 66 62.1
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.6e-17 93.2 66 62.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 1.6e-17 93.2 71 57.7
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 1.6e-17 93.2 125 38.4
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 2.1e-17 92.8 104 44.2
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 3.6e-17 92.0 69 58.0
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 4.8e-17 91.7 66 62.1
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 4.8e-17 91.7 66 60.6
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 4.8e-17 91.7 123 45.5
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 4.8e-17 91.7 75 56.0
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 6.2e-17 91.3 109 42.2
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 6.2e-17 91.3 69 55.1
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 6.2e-17 91.3 69 58.0
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.1e-16 90.5 68 58.8
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.1e-16 90.5 71 59.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.4e-16 90.1 68 57.4
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.8e-16 89.7 66 60.6
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 2.4e-16 89.4 69 59.4
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 3.1e-16 89.0 124 40.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.1e-16 89.0 124 40.3
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 4.0e-16 88.6 66 59.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.0e-16 88.6 71 56.3
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.0e-16 88.6 104 42.3
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 5.3e-16 88.2 101 46.5
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 6.9e-16 87.8 69 55.1
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.9e-16 87.8 68 57.4
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 9.0e-16 87.4 69 58.0
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.2e-15 87.0 85 50.6
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 1.2e-15 87.0 69 58.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 2.0e-15 86.3 69 55.1
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.6e-15 85.9 71 53.5
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 2.6e-15 85.9 129 36.4
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 5.8e-15 84.7 66 56.1
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 9.9e-15 84.0 68 52.9
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 9.9e-15 84.0 69 55.1
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.3e-14 83.6 71 53.5
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 1.3e-14 83.6 69 52.2
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.3e-14 83.6 70 54.3
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.2e-14 82.8 69 52.2
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.2e-14 82.8 69 52.2
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.2e-14 82.8 69 52.2
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.2e-14 82.8 69 52.2
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 3.8e-14 82.0 69 55.1
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 4.9e-14 81.6 69 53.6
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 8.4e-14 80.9 69 50.7
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 8.4e-14 80.9 93 45.2
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 8.4e-14 80.9 80 45.0
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.9e-13 79.7 69 49.3
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 1.9e-13 79.7 103 39.8
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 3.2e-13 79.0 69 53.6
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 4.2e-13 78.6 71 46.5
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-12 76.3 72 54.2
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 2.7e-12 75.9 68 47.1
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 6.0e-12 74.7 65 49.2
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.0e-11 73.9 111 37.8
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.0e-11 73.9 95 40.0
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.0e-11 72.4 94 38.3
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-10 70.1 93 38.7
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.5e-10 69.3 121 34.7
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 5.6e-10 68.2 71 45.1
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.4e-08 62.8 82 36.6
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.0e-07 59.7 45 55.6
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 2.6e-07 59.3 99 36.4
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 2.9e-06 55.8 45 53.3


User provided reference genes

Program Settings