Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 2.4e-75 285.4 145 100.0
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 5.3e-38 161.4 134 64.9
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.2e-35 152.1 126 67.5
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.1e-31 139.4 134 57.5
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 2.8e-31 139.0 134 59.0
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 3.4e-29 132.1 135 55.6
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.6e-26 123.2 134 52.2
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.7e-26 122.5 134 52.2
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 3.9e-25 118.6 134 50.7
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.8e-22 109.8 117 54.7
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.5e-21 106.7 141 45.4
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.7e-20 103.2 140 46.4
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 1.9e-19 99.8 134 45.5
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 6.0e-18 94.7 127 42.5
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 6.0e-18 94.7 118 43.2
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 3.9e-17 92.0 115 45.2
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 5.1e-17 91.7 120 45.8
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 6.7e-17 91.3 113 47.8
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.1e-16 90.5 132 40.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.9e-16 89.7 115 47.8
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 4.3e-16 88.6 119 42.9
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 5.7e-16 88.2 117 42.7
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.7e-16 87.4 111 44.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.3e-15 87.0 121 44.6
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.6e-15 86.7 113 44.2
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.7e-15 85.5 134 40.3
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 3.7e-15 85.5 131 42.7
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 6.3e-15 84.7 115 40.9
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 6.3e-15 84.7 118 44.1
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 6.3e-15 84.7 120 38.3
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 6.3e-15 84.7 132 38.6
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.4e-14 83.6 128 42.2
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 1.4e-14 83.6 125 42.4
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 3.1e-14 82.4 138 40.6
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 5.3e-14 81.6 113 40.7
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 6.9e-14 81.3 110 40.9
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 9.0e-14 80.9 120 44.2
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 1.5e-13 80.1 111 42.3
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 2.6e-13 79.3 91 47.3
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 2.6e-13 79.3 126 41.3
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.6e-13 79.3 120 41.7
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.4e-13 79.0 117 39.3
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.4e-13 79.0 119 40.3
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 1.3e-12 77.0 127 39.4
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.7e-12 76.6 115 39.1
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 2.2e-12 76.3 130 38.5
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 2.9e-12 75.9 71 54.9
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 6.5e-12 74.7 113 38.1
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 8.5e-12 74.3 103 44.7
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.1e-11 73.9 143 37.1
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.1e-11 73.9 124 37.1
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.4e-11 73.6 113 39.8
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.4e-11 73.6 149 32.9
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.9e-11 73.2 127 39.4
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.5e-11 72.8 145 35.2
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.5e-11 72.8 120 36.7
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.2e-11 72.4 139 38.1
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 3.2e-11 72.4 107 38.3
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.2e-11 72.4 142 33.1
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 3.2e-11 72.4 114 41.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 5.5e-11 71.6 136 36.0
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 5.5e-11 71.6 113 36.3
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 7.2e-11 71.2 117 36.8
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 9.4e-11 70.9 71 53.5
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 9.4e-11 70.9 126 36.5
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 9.4e-11 70.9 152 33.6
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 1.2e-10 70.5 106 38.7
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.2e-10 70.5 49 57.1
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 1.6e-10 70.1 81 44.4
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.7e-10 69.3 136 35.3
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.6e-10 68.9 50 68.0
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 4.6e-10 68.6 54 55.6
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 4.6e-10 68.6 128 36.7
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 4.6e-10 68.6 58 55.2
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 6.1e-10 68.2 105 36.2
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 7.9e-10 67.8 127 38.6
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 7.9e-10 67.8 55 56.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.4e-09 67.0 128 38.3
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 3.0e-09 65.9 54 55.6
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.9e-09 65.5 85 40.0
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 5.1e-09 65.1 58 48.3
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 5.1e-09 65.1 104 40.4
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 5.1e-09 65.1 140 30.7
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 6.7e-09 64.7 142 31.7
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.1e-08 63.9 123 35.8
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.1e-08 63.9 113 37.2
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 2.0e-08 63.2 74 41.9
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.5e-08 62.8 54 51.9
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 2.5e-08 62.8 54 50.0
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 3.3e-08 62.4 132 34.8
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.3e-08 62.4 132 35.6
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 3.3e-08 62.4 49 57.1
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 5.7e-08 61.6 48 56.2
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 7.4e-08 61.2 58 50.0
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 1.3e-07 60.5 54 50.0
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.7e-07 60.1 132 34.1
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 1.7e-07 60.1 135 34.1
AL6G43530 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.8e-06 56.6 44 68.2
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 2.4e-06 56.2 104 34.6
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-06 56.2 54 48.1
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 9.1e-06 54.3 49 49.0


User provided reference genes

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