Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR124510 Cardamine hirsuta HOM05D003602 ORTHO05D020334 5.6e-29 130.2 63 100.0
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.6e-15 85.5 67 62.7
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 2.1e-15 85.1 67 62.7
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 4.6e-15 84.0 67 61.2
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 1.0e-14 82.8 67 61.2
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 1.3e-14 82.4 67 61.2
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.8e-14 82.0 67 62.7
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 5.1e-14 80.5 67 62.7
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 5.1e-14 80.5 66 60.6
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 6.7e-14 80.1 66 59.1
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 6.7e-14 80.1 67 59.7
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 8.7e-14 79.7 67 56.7
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 8.7e-14 79.7 67 56.7
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 8.7e-14 79.7 67 56.7
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 8.7e-14 79.7 67 56.7
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 1.5e-13 79.0 67 56.7
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 1.5e-13 79.0 67 55.2
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 1.5e-13 79.0 67 55.2
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 1.9e-13 78.6 67 56.7
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.9e-13 78.6 67 56.7
Cpa.g.sc18.79 Carica papaya HOM05D003602 ORTHO05D004808 2.5e-13 78.2 67 56.7
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 2.5e-13 78.2 67 56.7
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.3e-13 77.8 67 53.7
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 3.3e-13 77.8 67 53.7
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 4.3e-13 77.4 67 55.2
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 5.7e-13 77.0 67 56.7
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 5.7e-13 77.0 67 53.7
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 7.4e-13 76.6 67 53.7
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 7.4e-13 76.6 67 53.7
TAR371G1016 Trochodendron aralioides HOM05D003602 ORTHO05D004808 7.4e-13 76.6 66 54.5
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 53.7
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 53.7
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 53.7
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 55.2
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 55.2
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 53.7
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 9.7e-13 76.3 67 53.7
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 55.2
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 53.7
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 55.2
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 53.7
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 53.7
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 1.3e-12 75.9 66 53.0
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 1.3e-12 75.9 67 55.2
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 1.6e-12 75.5 67 53.7
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.2e-12 75.1 67 52.2
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 2.2e-12 75.1 67 52.2
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 2.2e-12 75.1 65 53.8
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 2.8e-12 74.7 67 53.7
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 2.8e-12 74.7 67 52.2
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 3.7e-12 74.3 67 52.2
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 3.7e-12 74.3 67 53.7
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 3.7e-12 74.3 67 55.2
TAR375G0657 Trochodendron aralioides HOM05D003602 ORTHO05D004808 4.8e-12 73.9 67 53.7
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 6.3e-12 73.6 67 52.2
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 8.2e-12 73.2 67 52.2
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 1.1e-11 72.8 67 52.2
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.1e-11 72.8 67 50.7
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 1.4e-11 72.4 67 49.3
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 1.4e-11 72.4 67 49.3
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 1.8e-11 72.0 67 46.3
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 2.4e-11 71.6 67 50.7
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 3.1e-11 71.2 67 50.7
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 3.1e-11 71.2 67 53.7
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 3.1e-11 71.2 67 52.2
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 4.1e-11 70.9 65 50.8
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 4.1e-11 70.9 67 52.2
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 4.1e-11 70.9 67 47.8
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 4.1e-11 70.9 67 50.7
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 5.3e-11 70.5 67 47.8
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 5.3e-11 70.5 67 47.8
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 5.3e-11 70.5 67 49.3
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 5.3e-11 70.5 67 49.3
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 6.9e-11 70.1 67 50.7
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 9.1e-11 69.7 68 54.4
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 9.1e-11 69.7 67 52.2
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 9.1e-11 69.7 67 46.3
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 9.1e-11 69.7 67 46.3
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.2e-10 69.3 65 47.7
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 1.2e-10 69.3 65 47.7
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 1.2e-10 69.3 67 47.8
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 1.2e-10 69.3 67 47.8
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 1.5e-10 68.9 68 51.5
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 1.5e-10 68.9 67 47.8
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 1.5e-10 68.9 67 47.8
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 2.0e-10 68.6 67 49.3
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 2.0e-10 68.6 68 51.5
CAN.G1045.28 Capsicum annuum HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.6e-10 68.2 67 46.3
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 3.4e-10 67.8 67 47.8
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 3.4e-10 67.8 67 47.8
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 4.5e-10 67.4 64 48.4
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 5.9e-10 67.0 67 47.8
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 7.7e-10 66.6 67 44.8
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 1.0e-09 66.2 67 47.8
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 1.3e-09 65.9 63 49.2
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.3e-09 65.9 67 44.8
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.3e-09 65.9 67 46.3
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 1.3e-09 65.9 67 46.3
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 2.9e-09 64.7 67 44.8
FAN22G1715 Fragaria x ananassa HOM05D003602 ORTHO05D020334 3.8e-09 64.3 67 46.3
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 3.8e-09 64.3 68 47.1
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 5.0e-09 63.9 67 41.8
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 5.0e-09 63.9 67 46.3
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 5.0e-09 63.9 67 46.3
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 6.5e-09 63.5 67 44.8
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 6.5e-09 63.5 67 44.8
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 1.9e-08 62.0 67 41.8
FAN17G1901 Fragaria x ananassa HOM05D003602 ORTHO05D020334 2.5e-08 61.6 67 44.8
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 3.2e-08 61.2 65 44.6
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 3.2e-08 61.2 65 44.6
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 3.2e-08 61.2 67 41.8
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 4.2e-08 60.8 67 37.3
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 4.2e-08 60.8 65 38.5
SalBow3G0266 Salvia bowleyana HOM05D003602 ORTHO05D004808 4.2e-08 60.8 66 47.0
BcaB03g13365 Brassica carinata HOM05D003602 ORTHO05D004808 5.5e-08 60.5 62 50.0
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 7.2e-08 60.1 65 36.9
Lj9C388T18 Lonicera japonica HOM05D003602 ORTHO05D020334 9.4e-08 59.7 68 47.1
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 1.2e-07 59.3 64 40.6
ECA247G2319 Erigeron canadensis HOM05D003602 ORTHO05D020334 1.2e-07 59.3 68 44.1
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 2.7e-07 58.2 65 46.2
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 6.1e-07 57.0 68 45.6
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 7.9e-07 56.6 69 43.5
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.4e-06 55.8 46 60.9


User provided reference genes

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