Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.4e-173 612.1 309 100.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.1e-157 560.1 316 91.1
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 4.1e-157 558.1 315 90.2
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 6.8e-152 540.8 309 89.3
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 9.8e-151 537.0 309 88.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.2e-150 535.8 309 88.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-148 528.9 307 88.3
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 7.8e-148 527.3 327 83.8
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.3e-147 526.6 318 85.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.3e-147 525.8 317 86.1
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 3.0e-147 525.4 317 86.4
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.0e-135 486.1 308 82.8
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-134 481.1 313 80.8
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 6.4e-126 454.5 313 73.8
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 9.9e-119 430.6 298 71.1
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 2.2e-118 429.5 242 82.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.2e-118 429.5 246 81.7
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 3.8e-118 428.7 290 73.1
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 4.9e-118 428.3 282 73.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 6.4e-118 427.9 246 80.9
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 8.4e-118 427.6 271 78.2
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 8.4e-118 427.6 257 77.4
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.1e-117 427.2 242 83.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-117 427.2 300 74.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-117 427.2 300 74.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.4e-117 426.8 283 76.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 2.4e-117 426.0 285 73.7
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.4e-117 426.0 275 75.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-117 425.6 300 74.3
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.2e-117 425.2 242 82.6
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.4e-117 424.9 292 72.3
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 7.1e-117 424.5 298 70.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.1e-117 424.5 310 69.7
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 7.1e-117 424.5 279 73.5
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.3e-117 424.1 241 82.6
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.7e-116 422.5 279 74.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 2.7e-116 422.5 292 74.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 7.9e-116 421.0 317 67.8
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 7.9e-116 421.0 242 81.4
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.0e-115 420.6 260 76.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.0e-115 419.1 255 76.9
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.9e-115 418.7 248 79.8
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.9e-115 418.7 282 72.7
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.1e-115 418.3 294 69.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 5.1e-115 418.3 257 78.2
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 5.1e-115 418.3 282 72.7
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 6.6e-115 417.9 295 69.8
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 8.7e-115 417.5 296 70.6
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.9e-114 416.4 300 68.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.9e-114 416.4 253 76.3
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.9e-114 416.4 266 75.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.5e-114 416.0 288 71.9
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.3e-114 415.6 251 78.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.3e-114 415.6 302 68.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.3e-114 415.2 247 78.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 5.6e-114 414.8 245 78.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 5.6e-114 414.8 310 67.7
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.3e-113 413.7 309 68.6
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.6e-113 413.3 302 68.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.6e-113 413.3 304 67.4
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.1e-113 412.9 296 71.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 8.1e-113 411.0 249 77.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 8.1e-113 411.0 304 68.1
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-112 410.2 277 71.8
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.4e-112 410.2 286 71.3
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 5.3e-112 408.3 299 69.2
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-111 406.4 261 75.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.6e-111 406.0 248 76.2
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.4e-111 405.6 295 68.8
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 5.8e-111 404.8 302 68.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 9.9e-111 404.1 217 87.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.7e-110 403.3 271 71.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.7e-110 403.3 294 68.0
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.2e-110 402.9 306 68.0
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 3.8e-110 402.1 297 66.7
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.4e-110 401.4 251 75.3
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.9e-109 399.8 245 75.9
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.4e-109 399.4 296 67.9
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 5.4e-109 398.3 295 65.8
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.1e-109 397.9 255 73.7
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.2e-108 397.1 286 69.6
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 6.0e-108 394.8 274 68.2
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.5e-106 390.2 247 72.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 4.3e-106 388.7 244 73.0
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 7.4e-106 387.9 323 62.8
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.1e-105 386.3 247 72.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 2.8e-105 386.0 244 73.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 3.1e-104 382.5 281 67.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.1e-104 382.5 317 62.5
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.0e-104 382.1 278 65.5
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.2e-103 380.6 296 65.5
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.4e-103 379.0 251 75.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.7e-102 376.7 392 52.6
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 3.8e-102 375.6 252 71.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.4e-101 373.6 242 71.5
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 9.3e-101 370.9 212 81.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.6e-100 370.2 258 69.8
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 4.6e-100 368.6 238 76.1
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.5e-98 363.6 263 70.7
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.2e-95 354.0 371 52.8
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.5e-94 348.2 241 69.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.4e-93 347.1 335 55.2
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 2.5e-93 346.3 276 65.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.1e-92 343.2 246 71.5
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.1e-92 343.2 248 67.7
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.2e-89 331.3 271 58.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.8e-88 330.1 218 74.3
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 6.9e-88 328.2 215 73.5
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.1e-85 320.9 281 54.8
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 7.4e-82 308.1 215 70.2
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.4e-80 303.1 231 67.1
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 5.9e-79 298.5 224 71.9
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.5e-74 283.9 215 61.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.0e-74 283.5 167 80.2
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.0e-74 283.5 262 52.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 9.4e-69 264.6 179 70.9
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 4.0e-67 259.2 251 53.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 1.1e-66 257.7 167 71.9
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.2e-65 253.4 251 49.0
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 2.4e-64 250.0 159 73.6
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.9e-63 245.4 143 81.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.3e-59 233.4 219 58.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.5e-58 230.7 237 44.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-57 226.5 137 81.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 4.8e-57 225.7 191 61.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 7.0e-56 221.9 119 88.2
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.5e-55 219.2 254 51.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.7e-54 217.2 136 80.1
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.7e-54 217.2 136 80.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.5e-53 212.2 137 71.5
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.0e-51 208.0 134 70.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 2.3e-51 206.8 246 44.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 5.7e-50 202.2 164 66.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.1e-48 198.0 128 75.0
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.6e-47 194.1 146 68.5
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.5e-47 193.0 112 77.7
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 5.0e-46 189.1 226 48.7
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.9e-45 187.2 110 79.1
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.4e-43 181.0 158 59.5
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.2e-42 177.9 99 78.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.1e-40 169.5 238 38.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.1e-37 161.4 92 78.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 4.3e-37 159.5 224 38.4
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.0e-34 150.6 247 36.8
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 4.4e-34 149.4 130 56.9
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.5e-34 148.7 82 80.5
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 3.7e-33 146.4 79 83.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 6.0e-31 139.0 77 80.5
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 5.6e-29 132.5 102 62.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-26 124.8 88 72.7
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.0e-26 124.0 76 69.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 2.6e-26 123.6 66 80.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-23 114.4 63 81.0
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 4.3e-21 106.3 65 81.5
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.6e-21 105.9 56 78.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 5.6e-21 105.9 247 28.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.2e-20 102.4 80 66.2
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 6.4e-17 92.4 95 52.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.1e-16 91.7 60 75.0
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-14 85.1 48 77.1
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 9.6e-13 78.6 45 77.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.8e-12 77.0 146 33.6
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.8e-12 77.0 61 47.5
CARHR124880 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.0e-10 70.9 81 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.4e-08 64.7 110 34.5


User provided reference genes

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