Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.7e-211 739.2 395 100.0
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.1e-194 683.3 395 92.9
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.4e-194 682.9 395 93.4
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.8e-194 682.6 400 93.2
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.8e-190 668.7 400 92.0
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 3.7e-187 658.3 369 95.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.3e-184 649.0 408 88.5
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 4.3e-183 644.8 385 91.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 7.5e-180 634.0 398 90.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 7.5e-180 634.0 399 90.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.7e-179 631.7 397 89.4
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 8.3e-179 630.6 399 90.0
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 9.2e-178 627.1 399 90.5
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 7.8e-177 624.0 397 89.7
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-176 622.9 398 88.7
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.0e-176 622.1 396 87.9
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.0e-176 622.1 396 87.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 5.6e-175 617.8 396 87.1
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.6e-172 609.0 399 86.2
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.2e-170 602.1 369 86.7
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 7.3e-167 590.9 397 80.9
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 2.8e-166 589.0 396 80.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.6e-166 588.6 397 80.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-165 585.9 369 88.1
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.4e-165 585.9 371 85.2
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 5.2e-165 584.7 395 81.0
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 1.5e-164 583.2 395 80.5
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.6e-164 580.9 366 85.2
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 9.9e-164 580.5 399 79.9
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.2e-163 579.3 383 82.5
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.9e-163 578.9 370 87.8
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.8e-163 578.6 380 82.6
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.4e-162 575.9 371 84.6
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 7.1e-162 574.3 389 79.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 9.3e-162 573.9 371 84.4
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.5e-161 572.0 371 84.1
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 3.5e-161 572.0 365 83.6
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 4.6e-161 571.6 391 80.1
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 6.0e-161 571.2 382 80.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 1.0e-160 570.5 389 81.2
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.0e-160 570.5 388 79.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.0e-160 568.9 366 84.4
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 3.0e-160 568.9 386 80.3
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 5.1e-160 568.2 374 81.8
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 6.6e-160 567.8 395 78.0
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 8.7e-160 567.4 391 79.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.5e-159 566.6 405 78.0
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-159 566.6 404 77.2
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.9e-159 566.2 371 79.5
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 4.3e-159 565.1 368 82.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.6e-159 564.7 402 77.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 7.3e-159 564.3 417 74.3
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 9.6e-159 563.9 390 78.7
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 9.6e-159 563.9 401 77.8
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.1e-158 562.8 334 88.0
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.6e-158 562.0 389 79.4
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 3.6e-158 562.0 367 81.7
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.2e-158 561.2 412 74.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.2e-158 561.2 412 74.8
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 8.1e-158 560.8 355 84.2
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 8.1e-158 560.8 407 76.2
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.1e-157 560.5 364 82.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.4e-157 560.1 367 81.2
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.4e-157 560.1 367 81.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 3.1e-157 558.9 384 77.3
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 5.3e-157 558.1 378 78.6
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 5.3e-157 558.1 384 76.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.0e-157 557.4 412 74.5
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 9.0e-157 557.4 412 74.5
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 2.6e-156 555.8 374 81.0
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 3.4e-156 555.4 378 79.1
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 3.4e-156 555.4 386 79.0
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.4e-156 555.4 383 79.4
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.5e-156 555.1 411 76.2
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 5.8e-156 554.7 407 75.4
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 5.8e-156 554.7 376 76.9
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 7.6e-156 554.3 397 76.6
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 2.9e-155 552.4 336 90.8
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.9e-155 552.4 394 75.4
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.9e-155 552.4 405 75.6
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.9e-155 552.4 384 76.8
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 6.4e-155 551.2 398 75.4
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.1e-154 550.4 383 78.6
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 1.1e-154 550.4 398 74.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.4e-154 549.3 402 74.4
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 9.3e-154 547.4 384 76.0
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.6e-153 546.6 375 78.7
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 2.1e-153 546.2 364 80.2
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 2.7e-153 545.8 380 77.1
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 4.6e-153 545.0 364 82.1
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 6.0e-153 544.7 394 75.4
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.9e-153 544.3 345 81.7
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.9e-153 544.3 345 81.7
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 7.9e-153 544.3 377 77.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 2.3e-152 542.7 388 76.3
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.3e-152 542.7 380 77.4
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 5.1e-152 541.6 368 80.2
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.9e-151 539.7 406 73.9
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.3e-151 538.9 347 88.2
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.4e-149 532.7 349 79.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.1e-149 532.3 328 85.1
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 5.3e-149 531.6 378 75.9
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.2e-148 530.4 360 77.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 3.4e-148 528.9 377 75.6
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.4e-148 528.9 362 79.0
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 5.8e-148 528.1 388 73.7
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.9e-147 525.8 378 74.9
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.9e-147 525.8 379 73.9
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 8.4e-147 524.2 331 81.0
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 3.9e-144 515.4 371 76.5
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.5e-143 512.7 421 68.2
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 3.7e-142 508.8 297 88.2
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.8e-142 508.4 389 72.5
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 3.1e-141 505.8 307 85.0
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.0e-139 500.7 297 85.9
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 5.5e-138 495.0 340 75.9
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 7.1e-138 494.6 297 85.5
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 7.1e-138 494.6 370 72.4
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.5e-135 486.9 345 76.8
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 7.4e-135 484.6 377 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.1e-133 479.2 332 72.9
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 1.0e-131 474.2 406 70.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.4e-128 463.8 366 68.3
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.3e-127 459.1 418 62.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 3.1e-117 426.0 272 84.2
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.5e-116 422.2 246 90.2
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.5e-114 416.4 347 69.5
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.2e-114 415.6 334 66.8
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 9.4e-114 414.5 378 65.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.5e-108 395.6 295 68.8
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.5e-106 390.6 335 61.2
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.9e-99 366.3 346 56.9
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 5.0e-91 339.0 198 88.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 5.2e-88 328.9 198 89.9
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 5.2e-88 328.9 198 89.9
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 4.3e-74 282.7 166 85.5
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.2e-65 254.6 370 47.3
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.7e-65 252.7 294 46.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 2.3e-59 233.8 310 43.9
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.6e-55 220.3 328 42.4
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.2e-54 217.2 154 76.0
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.2e-54 217.2 130 83.8
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.8e-49 200.3 178 63.5
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.1e-48 198.4 200 62.0
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.4e-38 162.5 149 61.1
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-37 161.0 213 49.3
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 6.2e-33 146.0 126 64.3
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.7e-30 137.9 80 87.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.1e-28 131.0 112 61.6
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 2.8e-17 94.0 75 68.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.7e-14 84.7 48 89.6
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.2e-14 84.3 86 62.8
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 3.2e-13 80.5 42 88.1
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 4.2e-13 80.1 62 69.4
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 7.2e-13 79.3 90 51.1
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.4e-08 65.1 43 74.4


User provided reference genes

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