Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR122980 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.5e-66 256.1 136 100.0
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 2.8e-41 172.2 144 72.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 1.8e-40 169.5 131 75.6
Carub.0004s1074 Capsella rubella HOM05D005325 ORTHO05D003507 1.8e-40 169.5 129 72.9
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 9.9e-39 163.7 144 69.4
Sp4g12360 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.1e-37 160.2 131 71.8
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.2e-37 158.7 143 69.2
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 5.5e-37 157.9 130 71.5
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.2e-36 156.8 129 74.4
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 3.5e-36 155.2 137 65.0
BcaC02g11049 Brassica carinata HOM05D005325 ORTHO05D003507 6.0e-36 154.5 127 73.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 6.0e-36 154.5 140 69.3
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 9.6e-34 147.1 131 69.5
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 9.6e-34 147.1 131 69.5
BcaB06g28321 Brassica carinata HOM05D005325 ORTHO05D003507 1.3e-33 146.7 131 68.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.1e-33 146.0 130 69.2
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.4e-32 143.3 131 67.9
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 3.1e-32 142.1 130 61.5
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 4.0e-32 141.7 130 61.5
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 1.2e-31 140.2 135 60.0
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 2.0e-31 139.4 129 60.5
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.7e-30 136.3 124 59.7
BcaB02g10272 Brassica carinata HOM05D005325 ORTHO05D003507 1.7e-30 136.3 122 67.2
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 1.7e-30 136.3 126 57.9
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 8.4e-30 134.0 127 56.7
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.4e-29 133.3 126 56.3
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.4e-29 133.3 126 56.3
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.9e-29 132.9 128 57.8
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 1.9e-29 132.9 131 57.3
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 3.0e-27 125.6 125 57.6
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 8.7e-27 124.0 124 54.0
BcaC07g42458 Brassica carinata HOM05D005325 ORTHO05D003507 1.5e-26 123.2 125 56.0
BolC5t29309H Brassica oleracea HOM05D005325 ORTHO05D003507 1.5e-26 123.2 125 56.0
C05p05370 Brassica napus HOM05D005325 ORTHO05D003507 4.3e-26 121.7 125 54.4
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 9.7e-10 67.4 95 47.4
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 6.3e-09 64.7 146 33.6
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 3.1e-08 62.4 111 35.1
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 9.1e-08 60.8 130 35.4
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 9.1e-08 60.8 127 41.7
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 9.1e-08 60.8 80 42.5
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-07 60.5 127 41.7
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 1.5e-07 60.1 85 37.6
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 2.0e-07 59.7 94 37.2
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 2.0e-07 59.7 86 41.9
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 2.6e-07 59.3 110 33.6
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 2.6e-07 59.3 113 37.2
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.4e-07 58.9 127 40.9
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 4.5e-07 58.5 79 40.5
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 5.9e-07 58.2 91 31.9
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.0e-06 57.4 85 38.8
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 1.3e-06 57.0 83 36.1
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 1.3e-06 57.0 90 37.8
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 1.7e-06 56.6 83 38.6
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 1.7e-06 56.6 82 37.8
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 2.2e-06 56.2 114 36.8
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 2.2e-06 56.2 112 33.0
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.9e-06 55.8 78 41.0
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 3.8e-06 55.5 80 37.5
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 5.0e-06 55.1 85 37.6
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 8.5e-06 54.3 88 39.8


User provided reference genes

Program Settings