Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR120610 Cardamine hirsuta HOM05D003941 ORTHO05D032292 1.2e-155 553.1 277 100.0
CARHR120240 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.2e-139 500.0 276 90.2
AL4G22760 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 2.1e-96 356.3 283 65.0
CARHR120250 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.1e-91 339.7 285 62.1
AT2G27630 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.9e-85 319.3 278 61.2
Carub.0004s0831 Capsella rubella HOM05D003941 ORTHO05D009447 6.2e-80 301.6 278 57.6
AT2G27650 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.4e-79 300.4 278 57.2
Thhalv10005405m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 2.0e-78 296.6 280 55.0
AL8G38700 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 2.9e-77 292.7 286 53.8
Thhalv10005669m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 2.9e-77 292.7 282 53.2
Thhalv10005598m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 3.2e-76 289.3 272 52.9
AT5G61940 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.6e-75 285.4 287 54.0
Carub.0004s0829 Capsella rubella HOM05D003941 ORTHO05D009447 1.5e-73 280.4 283 55.1
AT5G51530 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 9.6e-73 277.7 278 51.1
CARHR275710 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.8e-69 265.8 292 51.0
CARHR275730 Cardamine hirsuta HOM05D003941 ORTHO05D009447 1.3e-66 257.3 273 50.2
CARHR275720 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.0e-66 256.1 283 48.4
AL8G38710 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 3.3e-65 252.7 283 48.1
Carub.0008s2263 Capsella rubella HOM05D003941 ORTHO05D009447 1.1e-63 247.7 283 47.3
AT1G52430 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 1.4e-63 247.3 274 48.2
Sp2g25130 Schrenkiella parvula HOM05D003941 ORTHO05D009447 1.8e-63 246.9 285 47.0
AT1G52450 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 5.3e-63 245.4 268 47.0
Carub.0008s2262 Capsella rubella HOM05D003941 ORTHO05D009447 5.3e-63 245.4 279 49.5
Carub.0001s4142 Capsella rubella HOM05D003941 ORTHO05D009447 5.5e-60 235.3 270 44.8
BcaC03g18102 Brassica carinata HOM05D003941 ORTHO05D009447 2.3e-58 229.9 278 47.1
AT5G61950 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 3.0e-58 229.6 283 43.8
BolC2t12225H Brassica oleracea HOM05D003941 ORTHO05D009447 5.7e-57 225.3 278 46.4
Carub.0008s2264 Capsella rubella HOM05D003941 ORTHO05D009447 2.2e-56 223.4 269 48.7
A02p41750 Brassica napus HOM05D003941 ORTHO05D009447 1.5e-54 217.2 278 44.2
BraA02t09115Z Brassica rapa HOM05D003941 ORTHO05D009447 3.4e-54 216.1 278 44.2
C02p61670 Brassica napus HOM05D003941 ORTHO05D009447 5.9e-54 215.3 278 43.9
AL2G20130 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 6.1e-51 205.3 277 44.0
BraA02t09120Z Brassica rapa HOM05D003941 ORTHO05D009447 2.8e-48 196.4 269 42.8
BcaC03g18107 Brassica carinata HOM05D003941 ORTHO05D009447 4.8e-48 195.7 269 42.0
BolC2t12229H Brassica oleracea HOM05D003941 ORTHO05D009447 4.8e-48 195.7 269 42.0
Carub.0002s1061 Capsella rubella HOM05D003941 ORTHO05D009447 4.8e-48 195.7 274 44.2
AT1G65130 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 8.2e-48 194.9 274 43.4
C02p61750 Brassica napus HOM05D003941 ORTHO05D009447 8.2e-48 194.9 269 42.4
Carub.0002s1065 Capsella rubella HOM05D003941 ORTHO05D009447 1.2e-46 191.0 280 42.5
AT1G65200 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.0e-46 190.3 278 43.5
CARHR056760 Cardamine hirsuta HOM05D003941 ORTHO05D009447 5.9e-46 188.7 263 43.3
AL2G19970 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 1.0e-45 188.0 257 42.8
Carub.0002s1066 Capsella rubella HOM05D003941 ORTHO05D009447 2.5e-44 183.3 274 41.6
Thhalv10019959m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 3.2e-44 183.0 265 41.5
BcaB07g29812 Brassica carinata HOM05D003941 ORTHO05D009447 5.5e-44 182.2 277 40.1
BcaB05g24095 Brassica carinata HOM05D003941 ORTHO05D009447 7.2e-44 181.8 267 40.4
CARHR056630 Cardamine hirsuta HOM05D003941 ORTHO05D009447 7.2e-44 181.8 277 40.4
BraA02t06363Z Brassica rapa HOM05D003941 ORTHO05D009447 2.7e-43 179.9 270 41.1
AL2G20180 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 4.7e-43 179.1 277 40.1
A02p13070 Brassica napus HOM05D003941 ORTHO05D009447 7.9e-43 178.3 270 40.7
CARHR038560 Cardamine hirsuta HOM05D003941 ORTHO05D009447 3.9e-42 176.0 272 40.1
BcaB07g29816 Brassica carinata HOM05D003941 ORTHO05D032292 6.7e-42 175.3 217 46.1
SpUn0054_0050 Schrenkiella parvula HOM05D003941 ORTHO05D009447 1.5e-41 174.1 276 39.5
A02p13090 Brassica napus HOM05D003941 ORTHO05D009447 8.2e-40 168.3 271 38.0
BraA02t06365Z Brassica rapa HOM05D003941 ORTHO05D009447 8.2e-40 168.3 271 38.0
BcaC03g14683 Brassica carinata HOM05D003941 ORTHO05D009447 3.1e-39 166.4 271 38.4
C02p21230 Brassica napus HOM05D003941 ORTHO05D009447 9.1e-39 164.9 273 38.5
BolC2t08263H Brassica oleracea HOM05D003941 ORTHO05D009447 9.1e-39 164.9 273 38.5
BcaB05g24093 Brassica carinata HOM05D003941 ORTHO05D009447 2.0e-38 163.7 259 42.5
AL2G19870 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 4.5e-38 162.5 298 36.9
A05p43090 Brassica napus HOM05D003941 ORTHO05D009447 1.0e-37 161.4 268 35.8
C05p62840 Brassica napus HOM05D003941 ORTHO05D009447 2.2e-37 160.2 274 36.1
BcaC03g14681 Brassica carinata HOM05D003941 ORTHO05D009447 3.8e-37 159.5 272 39.3
BolC2t08261H Brassica oleracea HOM05D003941 ORTHO05D009447 3.8e-37 159.5 272 39.3
BcaC05g29948 Brassica carinata HOM05D003941 ORTHO05D009447 6.5e-37 158.7 274 35.8
BolC5t34939H Brassica oleracea HOM05D003941 ORTHO05D009447 6.5e-37 158.7 274 35.8
BcaC05g30202 Brassica carinata HOM05D003941 ORTHO05D009447 3.2e-36 156.4 276 35.5
AL2G19840 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 4.2e-36 156.0 263 37.6
AT1G65110 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 4.2e-36 156.0 263 38.4
A02p41830 Brassica napus HOM05D003941 ORTHO05D009447 4.2e-36 156.0 204 44.6
BraA05t23053Z Brassica rapa HOM05D003941 ORTHO05D009447 7.2e-36 155.2 272 34.9
C02p21210 Brassica napus HOM05D003941 ORTHO05D009447 3.6e-35 152.9 275 37.8
BcaB07g29810 Brassica carinata HOM05D003941 ORTHO05D009447 4.7e-35 152.5 277 36.8
C02p61760 Brassica napus HOM05D003941 ORTHO05D009447 6.1e-35 152.1 212 43.4
CARHR038520 Cardamine hirsuta HOM05D003941 ORTHO05D009447 6.1e-35 152.1 254 37.8
A05p43100 Brassica napus HOM05D003941 ORTHO05D009447 8.0e-35 151.8 274 34.7
Carub.0002s1060 Capsella rubella HOM05D003941 ORTHO05D009447 1.8e-34 150.6 274 35.4
Aa31LG2G2340 Aethionema arabicum HOM05D003941 ORTHO05D009447 2.3e-34 150.2 286 34.3
AT1G65120 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.3e-34 150.2 299 34.1
BcaC05g30233 Brassica carinata HOM05D003941 ORTHO05D009447 4.0e-34 149.4 220 36.8
Aa31LG2G2310 Aethionema arabicum HOM05D003941 ORTHO05D009447 8.8e-34 148.3 265 35.8
A02p41810 Brassica napus HOM05D003941 ORTHO05D009447 2.0e-33 147.1 230 39.1
CARHR056690 Cardamine hirsuta HOM05D003941 ORTHO05D032292 1.3e-32 144.4 224 41.5
Sp3g03240 Schrenkiella parvula HOM05D003941 ORTHO05D009447 1.7e-32 144.1 264 35.6
CARHR056610 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.2e-32 143.7 244 38.1
Carub.0002s1057 Capsella rubella HOM05D003941 ORTHO05D009447 2.4e-31 140.2 227 36.6
THA.LOC104821900 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 8.0e-27 125.2 297 29.6
BcaNung07176 Brassica carinata HOM05D003941 ORTHO05D009447 6.3e-24 115.5 222 33.8
BcaC03g18108 Brassica carinata HOM05D003941 ORTHO05D009447 2.4e-23 113.6 107 52.3
THA.LOC104821885 Tarenaya hassleriana HOM05D003941 ORTHO05D012174 3.5e-22 109.8 269 29.4
Thhalv10015405m.g Eutrema salsugineum HOM05D003941 ORTHO05D009447 6.5e-21 105.5 278 30.6
THA.LOC104821865 Tarenaya hassleriana HOM05D003941 ORTHO05D009447 8.5e-21 105.1 276 27.5
Carub.0006s0157 Capsella rubella HOM05D003941 ORTHO05D009447 8.8e-18 95.1 266 28.2
BraA03t09474Z Brassica rapa HOM05D021944 ORTHO05D024454 1.2e-17 94.7 248 27.0
A03p00920 Brassica napus HOM05D021944 ORTHO05D024454 1.5e-17 94.4 248 27.0
THA.LOC104805708 Tarenaya hassleriana HOM05D003941 ORTHO05D002286 2.0e-17 94.0 283 29.7
CARHR056640 Cardamine hirsuta HOM05D003941 ORTHO05D009447 9.8e-17 91.7 82 54.9
AT5G02660 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 7.0e-15 85.5 249 30.5
AL4G30170 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 1.6e-14 84.3 282 25.5
BcaC02g11483 Brassica carinata HOM05D003941 ORTHO05D012174 7.7e-14 82.0 265 26.8
Carub.0004s1585 Capsella rubella HOM05D003941 ORTHO05D012174 1.0e-13 81.6 265 26.0
AT2G34240 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 2.9e-13 80.1 283 25.1
BcaC05g30201 Brassica carinata HOM05D003941 ORTHO05D009447 1.5e-12 77.8 259 24.3
AL4G30160 Arabidopsis lyrata HOM05D003941 ORTHO05D012174 2.5e-12 77.0 267 22.8
CARHR128320 Cardamine hirsuta HOM05D003941 ORTHO05D012174 5.6e-12 75.9 265 24.5
CARHR128330 Cardamine hirsuta HOM05D003941 ORTHO05D012174 7.3e-12 75.5 283 27.9
AT2G34220 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 4.7e-11 72.8 259 25.1
AT2G34230 Arabidopsis thaliana HOM05D003941 ORTHO05D012174 6.1e-11 72.4 270 25.2
BolC3t12678H Brassica oleracea HOM05D021944 ORTHO05D024454 9.2e-07 58.5 223 23.8
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 2.0e-06 57.4 91 27.5
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 2.7e-06 57.0 86 29.1
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 3.5e-06 56.6 91 27.5
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 5.9e-06 55.8 89 27.0
Psat4g054160 Pisum sativum HOM05D001961 ORTHO05D002286 7.8e-06 55.5 93 28.0


User provided reference genes

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