Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 2.9e-100 368.6 196 100.0
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 3.4e-80 302.0 196 84.7
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 3.4e-80 302.0 196 84.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 4.4e-80 301.6 198 86.9
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 4.4e-80 301.6 196 86.7
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.7e-79 299.7 200 85.5
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 5.0e-76 288.1 206 83.5
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 1.8e-73 279.6 198 81.3
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 1.2e-72 276.9 202 80.7
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 2.0e-72 276.2 203 78.8
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 4.4e-72 275.0 201 80.1
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 4.4e-72 275.0 201 80.1
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 4.4e-72 275.0 201 80.1
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 1.1e-70 270.4 202 78.7
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 7.0e-70 267.7 197 78.2
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 7.3e-67 257.7 201 77.1
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 3.7e-63 245.4 194 73.7
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 2.7e-61 239.2 198 70.7
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 1.0e-60 237.3 186 70.4
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 3.0e-60 235.7 202 67.3
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 2.1e-58 229.6 182 71.4
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 2.1e-58 229.6 186 71.0
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 3.6e-58 228.8 167 73.7
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 3.6e-58 228.8 167 73.7
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 6.2e-58 228.0 201 67.2
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 1.1e-57 227.3 193 67.4
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 1.8e-57 226.5 188 69.1
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 3.1e-57 225.7 192 67.2
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 4.0e-57 225.3 190 68.9
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 4.0e-57 225.3 200 67.5
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 4.0e-57 225.3 200 67.5
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 5.2e-57 224.9 185 69.2
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 8.9e-57 224.2 163 74.2
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 8.9e-57 224.2 185 70.3
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 8.9e-57 224.2 185 70.3
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 1.2e-56 223.8 172 73.8
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 1.5e-56 223.4 172 70.9
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 2.6e-56 222.6 199 66.8
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 3.4e-56 222.2 172 72.1
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 3.4e-56 222.2 189 66.1
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 3.4e-56 222.2 195 65.1
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 4.4e-56 221.9 193 64.8
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 4.4e-56 221.9 179 69.3
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.4e-56 221.9 193 64.2
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 5.8e-56 221.5 187 69.5
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 5.8e-56 221.5 192 66.7
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 5.8e-56 221.5 158 75.9
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 9.9e-56 220.7 186 67.7
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 9.9e-56 220.7 170 70.6
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.7e-55 219.9 172 70.9
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 2.2e-55 219.5 193 64.8
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 2.9e-55 219.2 185 65.9
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 3.8e-55 218.8 192 68.2
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 3.8e-55 218.8 187 67.4
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 3.8e-55 218.8 187 66.3
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 3.8e-55 218.8 205 65.4
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 6.4e-55 218.0 196 67.3
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 6.4e-55 218.0 194 64.4
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 6.4e-55 218.0 161 73.3
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 6.4e-55 218.0 161 73.3
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 8.4e-55 217.6 200 65.5
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 8.4e-55 217.6 161 73.3
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 1.1e-54 217.2 157 73.9
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.1e-54 217.2 161 74.5
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.1e-54 217.2 200 66.0
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 1.4e-54 216.9 167 70.7
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 1.4e-54 216.9 184 67.9
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 1.9e-54 216.5 202 63.4
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 2.4e-54 216.1 198 64.1
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 2.4e-54 216.1 201 64.2
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 3.2e-54 215.7 184 67.9
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 4.2e-54 215.3 174 71.3
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 5.4e-54 214.9 151 79.5
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 7.1e-54 214.5 162 74.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 7.1e-54 214.5 185 64.9
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 7.1e-54 214.5 189 67.7
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 9.2e-54 214.2 162 71.6
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 1.2e-53 213.8 193 61.7
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 1.2e-53 213.8 187 65.2
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 1.6e-53 213.4 159 72.3
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.6e-53 213.4 164 72.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 2.1e-53 213.0 199 64.3
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 2.7e-53 212.6 198 64.6
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.3e-52 210.3 157 75.8
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 1.7e-52 209.9 196 62.2
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.7e-52 209.9 190 66.3
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 2.3e-52 209.5 192 62.5
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 3.0e-52 209.1 206 61.2
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 3.9e-52 208.8 196 61.7
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 6.6e-52 208.0 156 72.4
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 6.6e-52 208.0 197 61.9
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 1.5e-51 206.8 202 64.9
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 1.9e-51 206.5 202 61.9
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 1.2e-50 203.8 132 81.1
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.8e-50 202.6 165 69.7
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 2.4e-49 199.5 168 67.9
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 3.1e-49 199.1 196 60.2
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 3.4e-48 195.7 156 71.2
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 1.7e-47 193.4 154 68.8
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 2.2e-47 193.0 154 68.8
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 1.4e-46 190.3 198 61.1
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 3.2e-46 189.1 159 74.2
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 4.2e-46 188.7 159 66.0
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 3.5e-45 185.7 188 57.4
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 2.3e-44 183.0 186 57.0
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 5.1e-44 181.8 166 64.5
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 6.6e-44 181.4 158 62.7
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 1.5e-43 180.3 116 82.8
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 1.9e-43 179.9 196 55.1
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 1.4e-41 173.7 130 70.0
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 1.8e-41 173.3 116 80.2
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.5e-40 170.2 120 74.2
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 3.4e-40 169.1 142 62.0
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 6.4e-39 164.9 118 74.6
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 3.0e-36 156.0 131 61.8
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 6.7e-36 154.8 182 50.0
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 2.5e-35 152.9 109 76.1
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 3.3e-35 152.5 137 62.0
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 9.0e-33 144.4 154 51.3
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 3.4e-32 142.5 86 88.4
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 3.5e-29 132.5 87 80.5
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.0e-28 131.0 91 78.0
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.3e-28 130.6 87 79.3
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 5.1e-28 128.6 78 88.5
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 4.5e-24 115.5 92 69.6
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 1.9e-22 110.2 142 51.4
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 5.7e-19 98.6 89 62.9
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 8.2e-18 94.7 65 69.2
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.9e-07 59.7 105 36.2


User provided reference genes

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