Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR118670 Cardamine hirsuta HOM05D000666 ORTHO05D001727 2.4e-68 262.3 146 100.0
CARHR273890 Cardamine hirsuta HOM05D000666 ORTHO05D001727 2.6e-46 189.1 156 75.0
AL8G36820 Arabidopsis lyrata HOM05D000666 ORTHO05D001727 2.1e-43 179.5 156 69.9
Carub.0005s1878 Capsella rubella HOM05D000666 ORTHO05D001727 7.9e-43 177.6 156 67.9
AT5G60210 Arabidopsis thaliana HOM05D000666 ORTHO05D001727 3.0e-42 175.6 155 69.0
Sp6g21840 Schrenkiella parvula HOM05D000666 ORTHO05D001727 8.8e-42 174.1 156 67.9
Carub.0008s2096 Capsella rubella HOM05D000666 ORTHO05D001727 7.4e-41 171.0 156 67.3
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.5e-37 157.5 156 61.5
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.9e-36 156.4 156 62.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 2.1e-35 152.9 156 59.6
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 6.1e-35 151.4 156 59.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 6.1e-35 151.4 156 59.0
BcaB05g22628 Brassica carinata HOM05D000666 ORTHO05D001727 3.3e-33 145.6 156 60.9
Aa31LG1G12370 Aethionema arabicum HOM05D000666 ORTHO05D001727 1.7e-32 143.3 152 59.2
BcaB01g04645 Brassica carinata HOM05D000666 ORTHO05D001727 2.9e-29 132.5 156 57.7
Thhalv10015878m.g Eutrema salsugineum HOM05D000666 ORTHO05D001727 8.0e-27 124.4 156 53.8
BcaC03g13986 Brassica carinata HOM05D000666 ORTHO05D001727 6.7e-26 121.3 156 52.6
BolC2t07278H Brassica oleracea HOM05D000666 ORTHO05D001727 6.7e-26 121.3 156 52.6
BolC3t13763H Brassica oleracea HOM05D000666 ORTHO05D001727 6.3e-24 114.8 132 59.8
C03p13000 Brassica napus HOM05D000666 ORTHO05D001727 2.4e-23 112.8 132 58.3
A03p11290 Brassica napus HOM05D000666 ORTHO05D001727 5.9e-22 108.2 128 60.2
BraA03t10441Z Brassica rapa HOM05D000666 ORTHO05D001727 5.9e-22 108.2 128 60.2
THA.LOC104810837 Tarenaya hassleriana HOM05D000666 ORTHO05D001727 1.0e-21 107.5 164 48.2
A02p06550 Brassica napus HOM05D000666 ORTHO05D001727 9.4e-20 100.9 170 45.3
BraA02t05738Z Brassica rapa HOM05D000666 ORTHO05D001727 9.4e-20 100.9 170 45.3
Cpa.g.sc318.2 Carica papaya HOM05D000666 ORTHO05D001727 5.7e-17 91.7 206 37.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 9.8e-17 90.9 127 55.1
SalBow3G2191 Salvia bowleyana HOM05D000666 ORTHO05D001727 5.4e-15 85.1 178 42.7
Manes.08G003600 Manihot esculenta HOM05D000666 ORTHO05D001727 1.6e-14 83.6 201 37.3
Peaxi162Scf00389g00623 Petunia axillaris HOM05D000666 ORTHO05D001727 2.2e-13 79.7 165 40.0
Sed0003857 Sechium edule HOM05D000666 ORTHO05D001727 3.8e-13 79.0 196 34.2
Nitab4.5_0000888g0210 Nicotiana tabacum HOM05D000666 ORTHO05D001727 6.5e-13 78.2 183 38.8
Ciclev10027972m.g Citrus clementina HOM05D000666 ORTHO05D001727 8.5e-13 77.8 206 35.4
Manes.04G026300 Manihot esculenta HOM05D000666 ORTHO05D001727 1.1e-12 77.4 204 34.3
Migut.N02628 Erythranthe guttata HOM05D000666 ORTHO05D001727 1.5e-12 77.0 161 38.5
CAN.G552.2 Capsicum annuum HOM05D000666 ORTHO05D001727 1.9e-12 76.6 167 40.1
Oeu022267.1 Olea europaea HOM05D000666 ORTHO05D001727 1.9e-12 76.6 194 38.7
Duzib150G1393 Durio zibethinus HOM05D000666 ORTHO05D001727 2.5e-12 76.3 207 35.3
Manes.11G140400 Manihot esculenta HOM05D000666 ORTHO05D001727 4.2e-12 75.5 197 35.5
TPR.G2981 Trifolium pratense HOM05D000666 ORTHO05D001727 4.2e-12 75.5 206 35.0
COL.COLO4_25260 Corchorus olitorius HOM05D000666 ORTHO05D001727 5.5e-12 75.1 206 34.0
Nitab4.5_0005556g0010 Nicotiana tabacum HOM05D000666 ORTHO05D001727 1.2e-11 73.9 183 38.3
Thecc.09G261500 Theobroma cacao HOM05D000666 ORTHO05D001727 2.7e-11 72.8 207 33.8
COL.COLO4_27078 Corchorus olitorius HOM05D000666 ORTHO05D001727 3.6e-11 72.4 194 33.5
CsaV3_1G013090 Cucumis sativus L. HOM05D000666 ORTHO05D001727 3.6e-11 72.4 195 33.8
Prupe.6G241200 Prunus persica HOM05D000666 ORTHO05D001727 3.6e-11 72.4 193 36.8
QL01p036663 Quercus lobata HOM05D000666 ORTHO05D001727 3.6e-11 72.4 201 33.8
FAN25G0821 Fragaria x ananassa HOM05D000666 ORTHO05D001727 4.7e-11 72.0 195 31.8
Potri.016G085900 Populus trichocarpa HOM05D000666 ORTHO05D001727 4.7e-11 72.0 204 32.4
Lalb_Chr19g0137441 Lupinus albus HOM05D000666 ORTHO05D001727 6.1e-11 71.6 205 33.2
Haze_23938 Corylus avellana HOM05D000666 ORTHO05D001727 8.0e-11 71.2 205 34.1
Eucgr.B02460 Eucalyptus grandis HOM05D000666 ORTHO05D001727 1.4e-10 70.5 205 32.2
Prupe.6G092800 Prunus persica HOM05D000666 ORTHO05D001727 1.4e-10 70.5 204 32.4
FAN16G2424 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.8e-10 70.1 193 32.6
Sc21g0000080 Simmondsia chinensis HOM05D000666 ORTHO05D001727 1.8e-10 70.1 179 35.8
Cfa011374 Carpinus fangiana HOM05D000666 ORTHO05D001727 2.3e-10 69.7 205 34.6
Lalb_Chr01g0004121 Lupinus albus HOM05D000666 ORTHO05D001727 3.0e-10 69.3 205 33.2
PGSC0003DMG400025371 Solanum tuberosum HOM05D000666 ORTHO05D001727 4.0e-10 68.9 155 38.1
CiPaw.13G106000 Carya illinoinensis HOM05D000666 ORTHO05D001727 5.2e-10 68.6 205 32.2
Duzib170G0124 Durio zibethinus HOM05D000666 ORTHO05D001727 5.2e-10 68.6 207 34.8
FvH4_3g33632 Fragaria vesca HOM05D000666 ORTHO05D001727 5.2e-10 68.6 197 32.0
FAN11G0949 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.2e-10 68.6 197 32.0
Cc01_g11650 Coffea canephora HOM05D000666 ORTHO05D001727 6.8e-10 68.2 145 39.3
Duzib168G0376 Durio zibethinus HOM05D000666 ORTHO05D001727 6.8e-10 68.2 207 32.9
TAR623G0803 Trochodendron aralioides HOM05D000666 ORTHO05D001727 6.8e-10 68.2 202 31.2
MSTRG.17858 Avicennia marina HOM05D000666 ORTHO05D001727 8.8e-10 67.8 202 33.7
C02p11840 Brassica napus HOM05D000666 ORTHO05D001727 8.8e-10 67.8 86 53.5
MD11G1123900 Malus domestica HOM05D000666 ORTHO05D001727 8.8e-10 67.8 188 32.4
Rhsim01G0220900 Rhododendron simsii HOM05D000666 ORTHO05D001727 8.8e-10 67.8 191 34.0
Glyma.11G151915 Glycine max HOM05D000666 ORTHO05D001727 1.2e-09 67.4 205 33.7
Lalb_Chr03g0027061 Lupinus albus HOM05D000666 ORTHO05D001727 1.2e-09 67.4 205 36.1
Oeu038949.1 Olea europaea HOM05D000666 ORTHO05D001727 1.2e-09 67.4 153 39.2
Aqoxy4G03196 Aquilegia oxysepala HOM05D000666 ORTHO05D001727 1.5e-09 67.0 200 32.0
FAN21G0691 Fragaria x ananassa HOM05D000666 ORTHO05D001727 1.5e-09 67.0 197 31.5
GSVIVG01025630001 Vitis vinifera HOM05D000666 ORTHO05D001727 1.5e-09 67.0 158 34.8
Dinv32803 Davidia involucrata HOM05D000666 ORTHO05D001431 2.0e-09 66.6 206 32.5
Sopen11g030140 Solanum pennellii HOM05D000666 ORTHO05D001727 2.0e-09 66.6 131 40.5
Duzib128G0466 Durio zibethinus HOM05D000666 ORTHO05D001727 2.6e-09 66.2 200 32.0
Gohir.D04G115700 Gossypium hirsutum HOM05D000666 ORTHO05D001727 2.6e-09 66.2 198 32.8
Gorai.009G420300 Gossypium raimondii HOM05D000666 ORTHO05D001727 2.6e-09 66.2 198 32.8
Hma1.2p1_0350F.1_g132750 Hydrangea macrophylla HOM05D000666 ORTHO05D001727 2.6e-09 66.2 189 32.3
Oeu005919.3 Olea europaea HOM05D000666 ORTHO05D001727 2.6e-09 66.2 139 38.8
Psat5g277040 Pisum sativum HOM05D000666 ORTHO05D001727 2.6e-09 66.2 163 36.2
Duzib093G0204 Durio zibethinus HOM05D000666 ORTHO05D001727 3.4e-09 65.9 200 32.0
Glyma.15G044900 Glycine max HOM05D000666 ORTHO05D001727 3.4e-09 65.9 200 32.5
MD03G1110200 Malus domestica HOM05D000666 ORTHO05D001727 3.4e-09 65.9 198 31.3
TAR633G2804 Trochodendron aralioides HOM05D000666 ORTHO05D001727 3.4e-09 65.9 202 30.2
Nitab4.5_0004924g0010 Nicotiana tabacum HOM05D000666 ORTHO05D001727 4.4e-09 65.5 191 33.5
Psat7g222360 Pisum sativum HOM05D000666 ORTHO05D001727 4.4e-09 65.5 181 35.9
vmacro14472 Vaccinium macrocarpon HOM05D000666 ORTHO05D001727 4.4e-09 65.5 193 34.7
QL07p045248 Quercus lobata HOM05D000666 ORTHO05D001727 5.7e-09 65.1 200 32.5
AUR62040022 Chenopodium quinoa HOM05D000666 ORTHO05D001727 7.5e-09 64.7 193 30.6
Lj1A183T51 Lonicera japonica HOM05D000666 ORTHO05D001727 7.5e-09 64.7 194 33.5
Lj3g0000964 Lotus japonicus HOM05D000666 ORTHO05D001727 7.5e-09 64.7 169 33.1
CSS0049299 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 9.8e-09 64.3 202 32.7
RcHm_v2.0_Chr5g0061061 Rosa chinensis HOM05D000666 ORTHO05D001727 9.8e-09 64.3 194 32.0
Thecc.05G054100 Theobroma cacao HOM05D000666 ORTHO05D001727 9.8e-09 64.3 200 32.5
CSS0026079 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 1.3e-08 63.9 202 32.7
Gohir.A04G076700 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.3e-08 63.9 198 32.3
Gohir.D09G102400 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.3e-08 63.9 207 32.4
Solyc10g086030.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 1.3e-08 63.9 158 34.8
Gohir.A05G075000 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.7e-08 63.5 196 33.2
VMungo1127G0512 Vigna mungo HOM05D000666 ORTHO05D001727 1.7e-08 63.5 195 32.8
DCAR_002495 Daucus carota HOM05D000666 ORTHO05D001727 2.2e-08 63.2 204 30.4
Sc21g0000020 Simmondsia chinensis HOM05D000666 ORTHO05D001727 2.2e-08 63.2 172 34.3
CANSAT54G0448 Cannabis sativa HOM05D000666 ORTHO05D001727 2.8e-08 62.8 170 37.6
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 2.8e-08 62.8 199 31.2
Dinv35711 Davidia involucrata HOM05D000666 ORTHO05D001727 2.8e-08 62.8 157 36.9
vmacro20057 Vaccinium macrocarpon HOM05D000666 ORTHO05D001727 2.8e-08 62.8 180 33.9
Actinidia03751 Actinidia chinensis HOM05D000666 ORTHO05D001727 3.7e-08 62.4 184 32.1
MELO3C005002.2 Cucumis melo HOM05D000666 ORTHO05D001727 3.7e-08 62.4 195 31.8
TAR369G0985 Trochodendron aralioides HOM05D000666 ORTHO05D001727 3.7e-08 62.4 184 32.1
PGSC0003DMG400017592 Solanum tuberosum HOM05D000666 ORTHO05D001727 4.9e-08 62.0 157 34.4
unitig_699.g19199 Utricularia gibba HOM05D000666 ORTHO05D001727 4.9e-08 62.0 176 35.8
GSVIVG01025121001 Vitis vinifera HOM05D000666 ORTHO05D001727 4.9e-08 62.0 151 34.4
Ciclev10011300m.g Citrus clementina HOM05D000666 ORTHO05D001727 6.3e-08 61.6 200 32.5
DCAR_006038 Daucus carota HOM05D000666 ORTHO05D001727 6.3e-08 61.6 202 32.2
Duzib106G0137 Durio zibethinus HOM05D000666 ORTHO05D001727 6.3e-08 61.6 200 31.5
EL10Ac7g17354 Beta vulgaris HOM05D000666 ORTHO05D001727 8.3e-08 61.2 197 32.0
Gorai.006G168600 Gossypium raimondii HOM05D000666 ORTHO05D001727 8.3e-08 61.2 200 32.5
Gohir.A09G105600 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.1e-07 60.8 201 33.3
Manes.09G080900 Manihot esculenta HOM05D000666 ORTHO05D001727 1.1e-07 60.8 201 30.8
Nitab4.5_0009843g0010 Nicotiana tabacum HOM05D000666 ORTHO05D001727 1.1e-07 60.8 191 34.0
Gohir.D05G077800 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.4e-07 60.5 196 32.1
Gorai.009G079300 Gossypium raimondii HOM05D000666 ORTHO05D001727 1.4e-07 60.5 196 32.7
Lalb_Chr02g0156341 Lupinus albus HOM05D000666 ORTHO05D001727 1.4e-07 60.5 198 30.8
Atru.chr8.2558 Acer truncatum HOM05D000666 ORTHO05D001727 1.8e-07 60.1 137 34.3
Actinidia11224 Actinidia chinensis HOM05D000666 ORTHO05D001727 1.8e-07 60.1 202 30.7
Glyma.03G178100 Glycine max HOM05D000666 ORTHO05D001727 1.8e-07 60.1 199 31.2
Medtr7g061150 Medicago truncatula HOM05D000666 ORTHO05D001727 1.8e-07 60.1 183 32.8
Medtr7g100730 Medicago truncatula HOM05D000666 ORTHO05D001727 1.8e-07 60.1 187 32.6
PGR102G2478 Punica granatum HOM05D000666 ORTHO05D001727 1.8e-07 60.1 115 40.9
CSS0033261 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 2.4e-07 59.7 155 36.1
CANSAT80G0496 Cannabis sativa HOM05D000666 ORTHO05D001727 2.4e-07 59.7 174 33.3
Sopen10g033740 Solanum pennellii HOM05D000666 ORTHO05D001727 2.4e-07 59.7 198 32.8
TWI31G1142 Tripterygium wilfordii HOM05D000666 ORTHO05D001727 2.4e-07 59.7 193 35.2
Dinv37254 Davidia involucrata HOM05D000666 ORTHO05D001727 3.1e-07 59.3 177 31.1
Gohir.D09G147500 Gossypium hirsutum HOM05D000666 ORTHO05D001727 3.1e-07 59.3 200 32.0
Cpa.g.sc45.32 Carica papaya HOM05D000666 ORTHO05D001727 4.1e-07 58.9 200 30.5
Haze_20647 Corylus avellana HOM05D000666 ORTHO05D001727 4.1e-07 58.9 199 30.7
Lsat_1_v5_gn_6_24000 Lactuca sativa HOM05D000666 ORTHO05D001727 4.1e-07 58.9 145 33.8
AUR62006504 Chenopodium quinoa HOM05D000666 ORTHO05D001727 7.0e-07 58.2 196 31.6
Cc11_g02980 Coffea canephora HOM05D000666 ORTHO05D001727 7.0e-07 58.2 190 29.5
CsaV3_3G035570 Cucumis sativus L. HOM05D000666 ORTHO05D001727 7.0e-07 58.2 135 34.1
Nitab4.5_0003973g0030 Nicotiana tabacum HOM05D000666 ORTHO05D001727 7.0e-07 58.2 182 31.3
CAN.G915.9 Capsicum annuum HOM05D000666 ORTHO05D001727 1.2e-06 57.4 198 31.3
CAN.G933.6 Capsicum annuum HOM05D000666 ORTHO05D001727 1.2e-06 57.4 128 35.2
Gohir.A09G151900 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.2e-06 57.4 200 31.5
Lj5g0006568 Lotus japonicus HOM05D000666 ORTHO05D001727 1.6e-06 57.0 181 29.8
Sed0012931 Sechium edule HOM05D000666 ORTHO05D001727 1.6e-06 57.0 125 34.4
SGA_v2.0_scaffold2G00916 Striga asiatica HOM05D000666 ORTHO05D001727 1.6e-06 57.0 125 40.0
EL10Ac9g22420 Beta vulgaris HOM05D000666 ORTHO05D001727 2.0e-06 56.6 196 30.6
Ca_22405_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 2.0e-06 56.6 140 31.4
PSO384G3662 Papaver somniferum HOM05D000666 ORTHO05D001727 2.0e-06 56.6 152 30.9
Phvul.007G163800 Phaseolus vulgaris HOM05D000666 ORTHO05D001727 2.0e-06 56.6 213 30.5
Solyc10g084290.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 2.0e-06 56.6 172 33.1
Gorai.006G121200 Gossypium raimondii HOM05D000666 ORTHO05D001727 2.7e-06 56.2 201 30.8
Solyc11g072490.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 2.7e-06 56.2 121 38.0
Dinv01987 Davidia involucrata HOM05D000666 ORTHO05D001727 3.5e-06 55.8 166 33.7
Medtr4g461060 Medicago truncatula HOM05D000666 ORTHO05D001727 3.5e-06 55.8 157 33.8
arahy.Tifrunner.gnm1.ann1.G3522P Arachis hypogaea HOM05D000666 ORTHO05D001727 4.5e-06 55.5 200 31.5
arahy.Tifrunner.gnm1.ann1.VB4B3G Arachis hypogaea HOM05D000666 ORTHO05D001727 4.5e-06 55.5 200 31.5
BcaB01g03791 Brassica carinata HOM05D000666 ORTHO05D001727 4.5e-06 55.5 146 31.5
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 4.5e-06 55.5 154 32.5
Nn2g12997 Nelumbo nucifera HOM05D000666 ORTHO05D001727 4.5e-06 55.5 200 32.5
PSO339G6671 Papaver somniferum HOM05D000666 ORTHO05D001727 4.5e-06 55.5 201 29.9
Peaxi162Scf01604g00017 Petunia axillaris HOM05D000666 ORTHO05D001727 4.5e-06 55.5 167 30.5
Ah.01g014890 Amaranthus hybridus HOM05D000666 ORTHO05D001727 5.9e-06 55.1 195 29.7
Peaxi162Scf00472g00413 Petunia axillaris HOM05D000666 ORTHO05D001727 5.9e-06 55.1 198 31.3
VMungo1080G0217 Vigna mungo HOM05D000666 ORTHO05D001727 5.9e-06 55.1 199 31.2
Lj3g0007552 Lotus japonicus HOM05D000666 ORTHO05D001727 7.7e-06 54.7 146 32.9
Medtr1g066850 Medicago truncatula HOM05D000666 ORTHO05D001727 7.7e-06 54.7 161 30.4
Oeu029543.1 Olea europaea HOM05D000666 ORTHO05D001727 7.7e-06 54.7 193 29.0
unitig_27.g25063 Utricularia gibba HOM05D000666 ORTHO05D001727 7.7e-06 54.7 166 33.7


User provided reference genes

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