Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.1e-108 396.7 206 100.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 5.3e-100 367.9 202 92.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.4e-99 365.2 201 91.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.8e-99 364.4 202 92.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.9e-98 362.1 202 91.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.3e-95 353.2 203 89.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.3e-95 352.4 202 89.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.3e-95 352.4 205 89.8
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 3.0e-95 352.1 203 88.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.9e-95 351.7 202 89.1
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.8e-93 345.5 209 86.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 6.2e-93 344.4 209 85.6
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-92 343.6 206 84.5
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.4e-92 342.4 206 83.5
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 6.9e-92 340.9 206 82.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-90 336.3 206 83.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.9e-90 335.5 207 83.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.4e-89 333.2 209 83.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 2.4e-89 332.4 210 80.5
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.1e-88 329.3 207 82.1
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.5e-86 323.2 202 81.2
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.8e-85 318.9 205 79.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.0e-82 310.5 174 88.5
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.2e-80 303.5 174 86.2
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 9.0e-76 287.3 205 72.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.2e-74 282.7 202 70.8
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 2.9e-74 282.3 208 72.1
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.0e-74 281.6 200 72.5
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 6.5e-74 281.2 203 71.4
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.5e-73 278.1 208 69.2
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.2e-73 277.7 205 70.7
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.6e-72 275.4 209 68.9
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.6e-72 275.0 200 71.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.0e-71 273.9 204 67.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.3e-71 273.5 194 73.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.8e-71 273.1 210 69.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.0e-71 272.3 204 69.6
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.0e-71 272.3 202 70.8
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.9e-71 271.9 202 68.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 6.7e-71 271.2 204 69.1
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 8.7e-71 270.8 200 70.0
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.1e-70 270.4 205 68.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.5e-70 270.0 198 69.2
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.9e-70 269.6 207 68.1
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.3e-70 268.9 202 68.3
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.3e-70 268.5 202 68.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.3e-70 268.5 191 71.7
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 4.3e-70 268.5 200 69.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.3e-70 268.5 195 71.8
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.4e-70 267.7 196 69.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 7.4e-70 267.7 207 66.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 7.4e-70 267.7 201 70.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.7e-70 267.3 199 69.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.3e-69 266.9 203 68.5
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.3e-69 266.9 211 68.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 201 69.2
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.2e-69 266.2 202 69.3
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 194 70.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.7e-69 265.4 196 69.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.7e-69 265.4 208 67.8
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 6.3e-69 264.6 198 67.7
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 8.2e-69 264.2 198 67.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.2e-69 264.2 194 70.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.2e-69 264.2 202 69.3
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.1e-68 263.8 204 67.6
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.1e-68 263.8 204 68.1
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-68 263.5 194 70.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.8e-68 263.1 190 71.1
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.8e-68 263.1 199 68.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.4e-68 262.7 190 70.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.4e-68 262.7 202 67.8
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.4e-68 262.7 194 70.6
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.4e-68 262.7 200 69.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.1e-68 261.9 200 67.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.9e-68 261.2 200 66.5
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-67 258.8 206 66.5
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.4e-67 258.8 202 66.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.9e-67 258.1 206 66.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 7.7e-67 257.7 178 72.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.7e-67 257.7 216 65.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 1.0e-66 257.3 201 67.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.3e-66 256.9 172 73.8
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.7e-66 256.5 219 64.4
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.2e-66 256.1 200 65.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.5e-66 254.2 199 67.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.5e-66 254.2 200 67.0
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 4.2e-65 251.9 199 67.3
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.2e-65 251.9 199 66.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.2e-65 251.9 197 62.9
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.5e-65 251.5 200 65.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.2e-65 251.1 199 66.8
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 7.2e-65 251.1 199 65.8
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 9.4e-65 250.8 152 79.6
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.2e-64 250.4 199 67.3
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.1e-64 249.6 197 66.0
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.1e-64 249.6 197 66.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.1e-64 249.6 205 62.0
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 2.7e-64 249.2 192 67.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.7e-64 249.2 191 65.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 7.9e-64 247.7 187 66.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.3e-63 246.1 147 79.6
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.5e-62 243.4 194 64.9
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 5.7e-62 241.5 187 65.2
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.7e-62 241.5 203 62.6
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 9.7e-62 240.7 190 64.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 9.7e-62 240.7 205 63.9
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-61 240.4 196 65.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.8e-61 239.2 173 69.9
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.3e-61 238.0 199 60.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.4e-60 236.9 284 48.9
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.8e-60 236.5 179 67.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.8e-60 236.5 194 65.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.4e-60 236.1 186 66.1
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.5e-59 233.4 204 61.8
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 7.7e-59 231.1 194 63.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.7e-58 229.9 150 76.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.9e-58 229.2 189 63.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.4e-57 226.9 163 69.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.9e-56 221.1 197 61.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 7.9e-56 221.1 206 59.7
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.9e-55 218.8 169 69.8
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 5.7e-54 214.9 184 58.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 9.7e-54 214.2 170 64.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.0e-50 204.1 121 81.0
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 3.8e-50 202.2 124 79.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-46 189.9 124 74.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 7.5e-46 188.0 166 57.8
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.3e-45 187.2 180 54.4
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.7e-45 186.8 151 60.9
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.3e-45 184.9 200 55.0
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-43 180.3 164 60.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 5.0e-42 175.3 192 52.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.5e-41 173.7 113 71.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.1e-40 169.9 112 77.7
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.0e-39 165.6 115 72.2
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 4.8e-37 158.7 103 75.7
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.4e-36 156.4 150 52.7
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.1e-36 155.6 182 48.4
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.5e-35 152.1 86 82.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.7e-34 150.2 172 46.5
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 9.5e-33 144.4 173 46.2
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.2e-31 138.7 173 46.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.4e-28 129.8 99 65.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-27 126.3 70 81.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.0e-26 124.4 70 80.0
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.1e-25 120.9 91 65.9
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 5.6e-17 92.0 146 39.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 4.7e-16 89.0 52 73.1
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.4e-15 87.4 184 32.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.1e-15 86.3 52 73.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.8e-15 85.1 194 34.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.7e-13 80.5 53 73.6
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 9.2e-12 74.7 62 64.5
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.7e-11 73.2 53 71.7
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.6e-08 62.8 40 77.5


User provided reference genes

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