Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.5e-118 429.5 208 100.0
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 4.6e-104 381.3 195 93.3
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 9.7e-102 373.6 195 93.3
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.8e-101 372.1 195 91.8
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.4e-100 369.8 195 91.8
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.4e-100 369.8 195 91.8
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 5.3e-100 367.9 195 92.3
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 5.3e-100 367.9 195 92.3
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 5.3e-100 367.9 195 92.3
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 6.9e-100 367.5 197 90.4
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.0e-99 365.9 196 91.8
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 3.4e-99 365.2 195 89.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.6e-94 349.0 211 82.5
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 5.2e-87 324.7 195 81.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 2.4e-84 315.8 195 78.5
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 2.4e-84 315.8 169 86.4
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.6e-83 312.4 169 85.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.6e-83 312.4 169 85.2
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.9e-83 311.2 195 74.9
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.0e-82 310.5 172 84.3
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.0e-82 310.5 169 84.0
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.7e-82 309.7 169 84.6
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 2.9e-82 308.9 194 73.7
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.8e-82 308.5 169 84.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.8e-82 308.5 174 83.3
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 6.5e-82 307.8 169 84.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 6.5e-82 307.8 169 84.0
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 6.5e-82 307.8 169 84.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 8.5e-82 307.4 169 83.4
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.5e-81 306.6 167 86.2
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.5e-81 306.6 169 84.0
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.9e-81 306.2 169 83.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 3.2e-81 305.4 194 74.7
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 3.2e-81 305.4 178 80.3
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.2e-81 305.4 178 80.9
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 3.2e-81 305.4 194 72.7
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.5e-81 304.7 169 82.8
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.5e-81 304.7 194 72.7
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 7.2e-81 304.3 165 85.5
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 9.4e-81 303.9 183 78.7
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 9.4e-81 303.9 174 80.5
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 1.6e-80 303.1 185 77.8
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 4.7e-80 301.6 167 83.8
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 6.1e-80 301.2 194 71.6
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 8.0e-80 300.8 194 71.6
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 8.0e-80 300.8 195 74.4
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.0e-80 300.8 195 73.3
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.8e-79 299.7 193 74.1
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 4.0e-79 298.5 163 84.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.8e-79 297.4 170 81.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 8.8e-79 297.4 187 74.3
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 1.2e-78 297.0 191 72.8
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.5e-78 296.6 166 82.5
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.0e-78 296.2 168 81.0
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.6e-78 295.8 155 88.4
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.3e-78 295.4 181 76.2
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.3e-78 295.4 166 81.9
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 4.4e-78 295.0 173 79.8
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 9.7e-78 293.9 169 78.7
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 2.2e-77 292.7 195 72.8
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.8e-77 292.4 195 73.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 4.8e-77 291.6 172 79.1
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 6.3e-77 291.2 159 84.9
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.8e-76 289.7 166 80.1
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.4e-76 289.3 166 78.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 3.1e-76 288.9 170 79.4
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 9.1e-76 287.3 159 83.0
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 2.7e-75 285.8 165 80.0
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.5e-75 285.4 165 80.0
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.8e-74 282.0 166 77.1
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.8e-74 282.0 172 76.2
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 3.8e-74 282.0 172 76.2
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.5e-73 279.3 195 69.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 3.2e-73 278.9 161 80.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-73 278.9 163 80.4
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 4.2e-73 278.5 164 79.3
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 1.2e-72 276.9 195 67.7
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.2e-72 276.9 182 73.6
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 3.6e-72 275.4 195 68.2
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 6.1e-72 274.6 191 67.5
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.4e-71 273.5 195 68.2
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.8e-71 273.1 195 68.7
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 3.0e-71 272.3 169 74.0
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 4.0e-71 271.9 195 68.2
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 3.4e-70 268.9 156 77.6
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 4.4e-70 268.5 175 73.1
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 7.0e-68 261.2 191 64.9
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 2.0e-67 259.6 165 73.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.7e-67 259.2 181 68.0
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 3.3e-65 252.3 155 74.8
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.6e-62 242.7 139 82.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 3.4e-62 242.3 150 78.0
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 9.8e-62 240.7 145 77.9
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 9.8e-62 240.7 139 82.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 5.4e-60 235.0 132 83.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 9.2e-60 234.2 148 74.3
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 2.7e-59 232.6 187 58.3
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 4.5e-59 231.9 136 80.1
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 4.5e-59 231.9 157 69.4
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 5.9e-59 231.5 159 71.1
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 2.9e-58 229.2 134 80.6
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 1.2e-56 223.8 153 68.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.4e-55 220.3 159 71.1
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.9e-55 217.6 121 83.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.3e-53 213.8 156 67.3
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 1.7e-50 203.4 169 59.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.3e-49 198.7 179 56.4
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 5.1e-42 175.3 156 58.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.9e-41 173.3 172 50.0
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.4e-38 162.2 129 62.0
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 6.4e-37 158.3 158 49.4
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 7.1e-36 154.8 99 73.7
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 1.2e-35 154.1 83 85.5
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.0e-34 151.0 83 83.1
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 5.6e-33 145.2 88 75.0
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.8e-32 142.9 83 81.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.9e-29 132.9 73 80.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.4e-28 130.6 155 45.2
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 7.1e-28 128.3 76 78.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-26 123.2 131 50.4
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.9e-20 103.6 57 78.9
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.0e-15 85.9 160 35.6
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.8e-14 82.0 73 58.9
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 7.1e-12 75.1 38 84.2
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-10 69.3 37 83.8
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-10 69.3 37 83.8
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 2.0e-06 57.0 70 47.1


User provided reference genes

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