Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.4e-44 182.6 94 100.0
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 1.6e-35 152.5 94 85.1
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 3.9e-34 147.9 94 83.0
Thhalv10000392m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 5.8e-30 134.0 94 71.3
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 7.6e-30 133.7 94 73.4
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 4.1e-15 84.7 92 58.7
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 1.3e-13 79.7 67 64.2
AL4G12950 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 2.9e-13 78.6 49 85.7
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 6.5e-13 77.4 74 54.1
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 1.4e-12 76.3 79 53.2
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 1.4e-12 76.3 67 59.7
BcaC07g41006 Brassica carinata HOM05D013772 ORTHO05D006334 2.5e-12 75.5 74 59.5
C08p40100 Brassica napus HOM05D013772 ORTHO05D006334 2.5e-12 75.5 74 59.5
BolC8t51580H Brassica oleracea HOM05D013772 ORTHO05D006334 2.5e-12 75.5 74 59.5
Sp4g02160 Schrenkiella parvula HOM05D013772 ORTHO05D006334 5.5e-12 74.3 74 58.1
A09p57080 Brassica napus HOM05D013772 ORTHO05D006334 1.2e-11 73.2 73 61.6
BraA09t41100Z Brassica rapa HOM05D013772 ORTHO05D006334 1.2e-11 73.2 73 61.6
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 1.6e-11 72.8 84 50.0
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 3.6e-11 71.6 67 58.2
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 6.1e-11 70.9 89 47.2
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 1.4e-10 69.7 89 47.2
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.8e-10 69.3 89 46.1
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.8e-10 69.3 67 55.2
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.3e-10 68.9 94 43.6
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 3.0e-10 68.6 94 44.7
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 3.0e-10 68.6 65 55.4
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 3.0e-10 68.6 65 55.4
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 3.0e-10 68.6 89 46.1
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 3.0e-10 68.6 92 46.7
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 3.9e-10 68.2 66 51.5
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 3.9e-10 68.2 67 53.7
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 5.1e-10 67.8 84 50.0
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 6.7e-10 67.4 97 45.4
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 8.8e-10 67.0 42 69.0
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 8.8e-10 67.0 70 52.9
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 8.8e-10 67.0 68 58.8
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 1.5e-09 66.2 69 55.1
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 1.5e-09 66.2 68 57.4
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 2.0e-09 65.9 92 43.5
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 2.0e-09 65.9 65 52.3
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 2.5e-09 65.5 68 57.4
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 2.5e-09 65.5 92 47.8
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 3.3e-09 65.1 93 44.1
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 3.3e-09 65.1 67 52.2
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 3.3e-09 65.1 93 46.2
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 5.7e-09 64.3 79 50.6
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 5.7e-09 64.3 71 54.9
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 5.7e-09 64.3 54 63.0
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 7.4e-09 63.9 69 56.5
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 9.7e-09 63.5 67 52.2
Thhalv10000405m.g Eutrema salsugineum HOM05D013772 ORTHO05D006334 9.7e-09 63.5 72 54.2
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 9.7e-09 63.5 91 46.2
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 9.7e-09 63.5 90 44.4
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 1.3e-08 63.2 95 44.2
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 1.7e-08 62.8 66 50.0
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 1.7e-08 62.8 93 44.1
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 2.8e-08 62.0 95 44.2
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 2.8e-08 62.0 93 43.0
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 2.8e-08 62.0 64 50.0
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 3.7e-08 61.6 83 48.2
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 3.7e-08 61.6 93 40.9
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 3.7e-08 61.6 67 50.7
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 6.3e-08 60.8 66 50.0
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 6.3e-08 60.8 93 43.0
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 6.3e-08 60.8 66 50.0
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 8.2e-08 60.5 57 54.4
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 1.1e-07 60.1 67 47.8
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 1.1e-07 60.1 80 50.0
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.1e-07 60.1 55 54.5
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.4e-07 59.7 53 60.4
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.4e-07 59.7 53 60.4
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.4e-07 59.7 83 48.2
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 1.4e-07 59.7 83 48.2
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 2.4e-07 58.9 65 49.2
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 2.4e-07 58.9 80 48.8
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 3.1e-07 58.5 92 45.7
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 3.1e-07 58.5 65 50.8
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 3.1e-07 58.5 41 65.9
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 4.1e-07 58.2 56 57.1
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 4.1e-07 58.2 88 45.5
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 5.3e-07 57.8 56 50.0
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 5.3e-07 57.8 65 50.8
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 5.3e-07 57.8 69 46.4
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 6.9e-07 57.4 49 55.1
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 6.9e-07 57.4 80 47.5
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 6.9e-07 57.4 80 43.8
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 6.9e-07 57.4 38 65.8
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 9.1e-07 57.0 61 52.5
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 9.1e-07 57.0 41 65.9
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 1.5e-06 56.2 92 43.5
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 2.0e-06 55.8 55 50.9
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 2.0e-06 55.8 49 55.1
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 2.0e-06 55.8 55 50.9
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 2.0e-06 55.8 49 55.1
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.0e-06 55.8 83 47.0
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 2.6e-06 55.5 56 48.2
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 2.6e-06 55.5 49 55.1
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 2.6e-06 55.5 49 55.1
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 2.6e-06 55.5 49 55.1
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 2.6e-06 55.5 55 50.9
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 3.4e-06 55.1 55 49.1
Zm00001eb316370 Zea mays HOM05D031961 ORTHO05D006334 3.4e-06 55.1 88 45.5
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 5.9e-06 54.3 55 49.1
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 5.9e-06 54.3 68 48.5
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 5.9e-06 54.3 55 49.1
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 7.7e-06 53.9 55 49.1
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 7.7e-06 53.9 69 47.8


User provided reference genes

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