Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR114170 Cardamine hirsuta HOM05D001756 ORTHO05D001581 7.5e-40 166.8 87 100.0
CARHR114180 Cardamine hirsuta HOM05D001756 ORTHO05D001581 3.3e-35 151.4 87 90.8
AL4G12440 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 3.3e-27 124.8 84 76.2
Carub.0004s0199 Capsella rubella HOM05D001756 ORTHO05D001581 9.5e-27 123.2 88 76.1
C04p52190 Brassica napus HOM05D001756 ORTHO05D001581 1.6e-26 122.5 84 76.2
BcaC02g08589 Brassica carinata HOM05D001756 ORTHO05D001581 2.8e-26 121.7 84 76.2
BolC4t26796H Brassica oleracea HOM05D001756 ORTHO05D001581 2.8e-26 121.7 84 76.2
A04p17430 Brassica napus HOM05D001756 ORTHO05D001581 6.2e-26 120.6 84 75.0
BraA04t17366Z Brassica rapa HOM05D001756 ORTHO05D001581 6.2e-26 120.6 84 75.0
AT2G22860 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 8.1e-26 120.2 87 72.4
BcaB06g27846 Brassica carinata HOM05D001756 ORTHO05D001581 1.8e-25 119.0 84 73.8
Sp4g01910 Schrenkiella parvula HOM05D001756 ORTHO05D001581 2.3e-25 118.6 84 69.0
Thhalv10000381m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 4.4e-24 114.4 85 74.1
THA.LOC104819883 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.8e-18 95.1 85 58.8
THA.LOC104804198 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 1.1e-17 93.2 83 59.0
Prupe.6G217500 Prunus persica HOM05D001756 ORTHO05D001581 1.0e-12 76.6 83 53.0
Sp7g35370 Schrenkiella parvula HOM05D012092 ORTHO05D001581 1.0e-12 76.6 87 52.9
AT4G37720 Arabidopsis thaliana HOM05D012092 ORTHO05D001581 3.9e-12 74.7 87 48.3
CARHR246110 Cardamine hirsuta HOM05D012092 ORTHO05D001581 3.9e-12 74.7 87 51.7
Carub.0007s0253 Capsella rubella HOM05D012092 ORTHO05D001581 8.7e-12 73.6 88 52.3
Cpa.g.c33491 Carica papaya HOM05D001756 ORTHO05D001581 1.5e-11 72.8 85 51.8
BcaB03g12333 Brassica carinata HOM05D012092 ORTHO05D001581 2.5e-11 72.0 89 49.4
A08p22740 Brassica napus HOM05D012092 ORTHO05D001581 4.3e-11 71.2 89 49.4
BraA08t34243Z Brassica rapa HOM05D012092 ORTHO05D001581 4.3e-11 71.2 89 49.4
Actinidia16413 Actinidia chinensis HOM05D001756 ORTHO05D001581 5.6e-11 70.9 86 48.8
Rhsim10G0094800 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.8e-10 68.6 85 49.4
Thhalv10010875m.g Eutrema salsugineum HOM05D001756 ORTHO05D001581 3.6e-10 68.2 86 48.8
vmacro01948 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 6.2e-10 67.4 83 48.2
Lj7A111T6 Lonicera japonica HOM05D001756 ORTHO05D001581 8.1e-10 67.0 85 45.9
Thhalv10026843m.g Eutrema salsugineum HOM05D012092 ORTHO05D001581 1.1e-09 66.6 87 49.4
AL5G29770 Arabidopsis lyrata HOM05D001756 ORTHO05D001581 1.4e-09 66.2 85 49.4
AL7G12960 Arabidopsis lyrata HOM05D012092 ORTHO05D001581 2.4e-09 65.5 69 49.3
Actinidia28000 Actinidia chinensis HOM05D001756 ORTHO05D001581 3.1e-09 65.1 85 49.4
Hma1.2p1_1760F.1_g301210 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 3.1e-09 65.1 85 45.9
Hma1.2p1_2434F.1_g322120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 4.0e-09 64.7 85 45.9
CARHR158860 Cardamine hirsuta HOM05D001756 ORTHO05D001581 5.3e-09 64.3 86 47.7
Actinidia11965 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.0e-09 63.5 89 42.7
RcHm_v2.0_Chr2g0108571 Rosa chinensis HOM05D001756 ORTHO05D001581 9.0e-09 63.5 85 44.7
A09p42920 Brassica napus HOM05D001756 ORTHO05D001581 1.2e-08 63.2 86 46.5
BraA09t39759Z Brassica rapa HOM05D001756 ORTHO05D001581 1.2e-08 63.2 86 46.5
Sabra07G0005100 Salix brachista HOM05D001756 ORTHO05D001581 1.2e-08 63.2 88 48.9
C08p24800 Brassica napus HOM05D001756 ORTHO05D001581 1.5e-08 62.8 86 45.3
BolC8t50097H Brassica oleracea HOM05D001756 ORTHO05D001581 1.5e-08 62.8 86 45.3
Actinidia34539 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.0e-08 62.4 85 44.7
vmacro01947 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 2.0e-08 62.4 85 47.1
Atru.chr3.1054 Acer truncatum HOM05D001756 ORTHO05D001581 2.6e-08 62.0 82 50.0
BcaB05g23153 Brassica carinata HOM05D001756 ORTHO05D001581 2.6e-08 62.0 77 50.6
Carub.0005s1613 Capsella rubella HOM05D001756 ORTHO05D001581 2.6e-08 62.0 86 45.3
Hma1.2p1_1051F.1_g252120 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.6e-08 62.0 86 47.7
Lj5g0025862 Lotus japonicus HOM05D001756 ORTHO05D001581 2.6e-08 62.0 86 46.5
THA.LOC104827714 Tarenaya hassleriana HOM05D001756 ORTHO05D001581 2.6e-08 62.0 82 50.0
BcaNung02085 Brassica carinata HOM05D012092 ORTHO05D001581 3.4e-08 61.6 82 47.6
C01p30590 Brassica napus HOM05D001756 ORTHO05D001581 3.4e-08 61.6 86 47.7
C07p62600 Brassica napus HOM05D012092 ORTHO05D001581 3.4e-08 61.6 82 47.6
BolC1t02995H Brassica oleracea HOM05D001756 ORTHO05D001581 3.4e-08 61.6 86 47.7
BolC7t46675H Brassica oleracea HOM05D012092 ORTHO05D001581 3.4e-08 61.6 82 47.6
FAN26G2568 Fragaria x ananassa HOM05D001756 ORTHO05D001581 3.4e-08 61.6 85 42.4
Sp5g12310 Schrenkiella parvula HOM05D001756 ORTHO05D001581 3.4e-08 61.6 86 47.7
Thecc.01G075600 Theobroma cacao HOM05D001756 ORTHO05D001581 3.4e-08 61.6 84 44.0
AT3G49780 Arabidopsis thaliana HOM05D001756 ORTHO05D001581 4.4e-08 61.2 85 47.1
A03p65500 Brassica napus HOM05D012092 ORTHO05D001581 4.4e-08 61.2 82 47.6
BraA03t15602Z Brassica rapa HOM05D012092 ORTHO05D001581 4.4e-08 61.2 82 47.6
CSS0000381 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 4.4e-08 61.2 85 47.1
Dinv09540 Davidia involucrata HOM05D001756 ORTHO05D001581 4.4e-08 61.2 85 45.9
Duzib147G1196 Durio zibethinus HOM05D001756 ORTHO05D001581 5.8e-08 60.8 88 45.5
FAN23G1434 Fragaria x ananassa HOM05D001756 ORTHO05D001581 5.8e-08 60.8 85 41.2
Lj4A164T42 Lonicera japonica HOM05D001756 ORTHO05D001581 5.8e-08 60.8 86 41.9
RhsimUnG0122800 Rhododendron simsii HOM05D001756 ORTHO05D001581 5.8e-08 60.8 87 43.7
Eucgr.H02325 Eucalyptus grandis HOM05D001756 ORTHO05D001581 7.6e-08 60.5 84 42.9
Actinidia04395 Actinidia chinensis HOM05D001756 ORTHO05D001581 9.9e-08 60.1 85 44.7
BcaC07g39442 Brassica carinata HOM05D001756 ORTHO05D001581 9.9e-08 60.1 77 48.1
CSS0040959 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 9.9e-08 60.1 84 41.7
Eucgr.H02324 Eucalyptus grandis HOM05D001756 ORTHO05D001581 9.9e-08 60.1 85 44.7
Potri.007G006800 Populus trichocarpa HOM05D001756 ORTHO05D001581 9.9e-08 60.1 88 44.3
A01p24530 Brassica napus HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 46.5
BraA01t02363Z Brassica rapa HOM05D001756 ORTHO05D001581 1.3e-07 59.7 86 46.5
Dinv44936 Davidia involucrata HOM05D001756 ORTHO05D001581 1.3e-07 59.7 85 47.1
Prupe.1G420000 Prunus persica HOM05D001756 ORTHO05D001581 1.3e-07 59.7 83 47.0
BcaB01g00674 Brassica carinata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 77 48.1
Dinv26955 Davidia involucrata HOM05D001756 ORTHO05D001581 1.7e-07 59.3 87 46.0
BcaC09g49971 Brassica carinata HOM05D001756 ORTHO05D001581 2.2e-07 58.9 77 50.6
AUR62004029 Chenopodium quinoa HOM05D001756 ORTHO05D001581 2.2e-07 58.9 84 45.2
Actinidia00357 Actinidia chinensis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 85 45.9
CSS0039448 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 2.9e-07 58.5 86 45.3
Glyma.14G089063 Glycine max HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 40.5
Glyma.17G233500 Glycine max HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 40.5
Hma1.2p1_0424F.1_g150520 Hydrangea macrophylla HOM05D001756 ORTHO05D001581 2.9e-07 58.5 85 41.2
RhsimUnG0041200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 45.2
RhsimUnG0123200 Rhododendron simsii HOM05D001756 ORTHO05D001581 2.9e-07 58.5 84 45.2
CAN.G1343.2 Capsicum annuum HOM05D001756 ORTHO05D001581 3.8e-07 58.2 78 43.6
COL.COLO4_11608 Corchorus olitorius HOM05D001756 ORTHO05D001581 3.8e-07 58.2 85 43.5
COL.COLO4_28472 Corchorus olitorius HOM05D001756 ORTHO05D001581 4.9e-07 57.8 85 43.5
Duzib264G0169 Durio zibethinus HOM05D001756 ORTHO05D001581 4.9e-07 57.8 85 42.4
PGR042G3192 Punica granatum HOM05D001756 ORTHO05D001581 4.9e-07 57.8 80 46.2
Sabra14G0006400 Salix brachista HOM05D001756 ORTHO05D001581 4.9e-07 57.8 83 47.0
Gorai.008G085100 Gossypium raimondii HOM05D001756 ORTHO05D001581 6.4e-07 57.4 86 40.7
GSVIVG01004437001 Vitis vinifera HOM05D001756 ORTHO05D001581 6.4e-07 57.4 87 40.2
CiPaw.02G001200 Carya illinoinensis HOM05D001756 ORTHO05D001581 8.4e-07 57.0 84 42.9
Dinv16070 Davidia involucrata HOM05D001756 ORTHO05D001581 8.4e-07 57.0 85 44.7
Dinv23040 Davidia involucrata HOM05D001756 ORTHO05D001581 8.4e-07 57.0 84 42.9
Eucgr.I00676 Eucalyptus grandis HOM05D001756 ORTHO05D001581 8.4e-07 57.0 82 45.1
Gohir.D12G076500 Gossypium hirsutum HOM05D001756 ORTHO05D001581 8.4e-07 57.0 86 40.7
MD02G1189200 Malus domestica HOM05D001756 ORTHO05D001581 8.4e-07 57.0 82 43.9
Haze_10304 Corylus avellana HOM05D001756 ORTHO05D001581 1.1e-06 56.6 86 46.5
Rhsim08G0091500 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.1e-06 56.6 87 41.4
Cfa004702 Carpinus fangiana HOM05D001756 ORTHO05D001581 1.4e-06 56.2 86 47.7
ECA238G4790 Erigeron canadensis HOM05D001756 ORTHO05D001581 1.4e-06 56.2 79 45.6
Rhsim08G0091400 Rhododendron simsii HOM05D001756 ORTHO05D001581 1.4e-06 56.2 87 41.4
FAN20G1648 Fragaria x ananassa HOM05D001756 ORTHO05D001581 1.9e-06 55.8 81 44.4
AUR62007537 Chenopodium quinoa HOM05D001756 ORTHO05D001581 3.2e-06 55.1 85 47.1
Potri.014G006900 Populus trichocarpa HOM05D001756 ORTHO05D001581 3.2e-06 55.1 84 40.5
TWI23G1082 Tripterygium wilfordii HOM05D001756 ORTHO05D001581 3.2e-06 55.1 83 47.0
Duzib132G0635 Durio zibethinus HOM05D001756 ORTHO05D001581 4.2e-06 54.7 86 41.9
Gohir.D11G210700 Gossypium hirsutum HOM05D001756 ORTHO05D001581 5.4e-06 54.3 87 39.1
Gorai.007G226000 Gossypium raimondii HOM05D001756 ORTHO05D001581 5.4e-06 54.3 87 39.1
Manes.07G057300 Manihot esculenta HOM05D001756 ORTHO05D001581 5.4e-06 54.3 81 38.3
Potri.002G116300 Populus trichocarpa HOM05D001756 ORTHO05D001581 5.4e-06 54.3 84 40.5
QL06p038990 Quercus lobata HOM05D001756 ORTHO05D001581 5.4e-06 54.3 89 42.7
RcHm_v2.0_Chr6g0248481 Rosa chinensis HOM05D001756 ORTHO05D001581 5.4e-06 54.3 81 45.7
TAR376G0419 Trochodendron aralioides HOM05D001756 ORTHO05D001581 5.4e-06 54.3 85 38.8
GSVIVG01009309001 Vitis vinifera HOM05D001756 ORTHO05D001581 5.4e-06 54.3 86 45.3
CiPaw.01G002400 Carya illinoinensis HOM05D001756 ORTHO05D001581 7.1e-06 53.9 86 45.3
CSS0048145 Camellia sinensis var. sinensis HOM05D001756 ORTHO05D001581 9.3e-06 53.5 84 40.5
Duzib116G0348 Durio zibethinus HOM05D001756 ORTHO05D001581 9.3e-06 53.5 85 41.2
PGR004G0933 Punica granatum HOM05D001756 ORTHO05D001581 9.3e-06 53.5 87 43.7
TAR628G0014 Trochodendron aralioides HOM05D001756 ORTHO05D001581 9.3e-06 53.5 83 39.8
vmacro18016 Vaccinium macrocarpon HOM05D001756 ORTHO05D001581 9.3e-06 53.5 79 45.6


User provided reference genes

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