Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.6e-21 104.0 53 100.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 9.3e-17 89.4 53 86.8
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 9.3e-17 89.4 53 88.7
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 9.3e-17 89.4 53 88.7
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 9.3e-17 89.4 53 88.7
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 2.1e-16 88.2 53 86.8
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 2.7e-16 87.8 53 84.9
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 3.5e-16 87.4 53 86.8
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 3.5e-16 87.4 53 86.8
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 3.5e-16 87.4 53 86.8
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 3.5e-16 87.4 53 86.8
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 3.5e-16 87.4 53 86.8
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 1.3e-15 85.5 52 84.6
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 3.3e-14 80.9 53 71.7
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 3.3e-14 80.9 53 71.7
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 5.6e-14 80.1 53 69.8
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 7.4e-14 79.7 51 76.5
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.3e-13 79.0 53 69.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.3e-13 79.0 53 67.9
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 2.1e-13 78.2 53 69.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 2.8e-13 77.8 53 67.9
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.8e-13 77.8 51 72.5
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.8e-13 77.8 53 71.7
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 3.7e-13 77.4 52 71.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.7e-13 77.4 51 72.5
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.7e-13 77.4 51 72.5
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.7e-13 77.4 51 72.5
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 3.7e-13 77.4 51 70.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 3.7e-13 77.4 50 72.0
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 3.7e-13 77.4 53 67.9
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 4.8e-13 77.0 53 69.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 6.2e-13 76.6 51 68.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 6.2e-13 76.6 51 72.5
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 8.1e-13 76.3 51 68.6
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 8.1e-13 76.3 53 67.9
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 8.1e-13 76.3 53 69.8
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 8.1e-13 76.3 53 66.0
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 8.1e-13 76.3 53 69.8
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.1e-12 75.9 51 72.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 1.1e-12 75.9 53 67.9
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.1e-12 75.9 52 69.2
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.1e-12 75.9 53 67.9
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.1e-12 75.9 50 72.0
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.4e-12 75.5 53 69.8
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.4e-12 75.5 53 69.8
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 1.4e-12 75.5 53 69.8
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 1.4e-12 75.5 53 69.8
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.8e-12 75.1 50 72.0
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 1.8e-12 75.1 51 72.5
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 1.8e-12 75.1 53 66.0
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.8e-12 75.1 50 72.0
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 1.8e-12 75.1 53 66.0
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 2.4e-12 74.7 51 68.6
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.4e-12 74.7 53 71.7
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 4.0e-12 73.9 50 74.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 4.0e-12 73.9 51 66.7
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.3e-12 73.6 51 68.6
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.3e-12 73.6 51 68.6
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 5.3e-12 73.6 53 67.9
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 6.9e-12 73.2 51 70.6
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.9e-12 73.2 51 68.6
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 6.9e-12 73.2 51 68.6
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 6.9e-12 73.2 51 68.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 6.9e-12 73.2 50 68.0
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 6.9e-12 73.2 50 72.0
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 6.9e-12 73.2 50 70.0
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 9.0e-12 72.8 51 74.5
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 9.0e-12 72.8 53 66.0
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 9.0e-12 72.8 52 65.4
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 9.0e-12 72.8 53 67.9
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.2e-11 72.4 50 70.0
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.2e-11 72.4 53 66.0
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.2e-11 72.4 50 70.0
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 1.2e-11 72.4 51 68.6
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 1.5e-11 72.0 50 70.0
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.5e-11 72.0 50 70.0
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 1.5e-11 72.0 50 70.0
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.5e-11 72.0 50 70.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.5e-11 72.0 50 70.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.0e-11 71.6 51 68.6
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 2.0e-11 71.6 53 64.2
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.6e-11 71.2 53 62.3
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-11 71.2 53 62.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-11 71.2 53 62.3
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-11 71.2 53 62.3
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-11 71.2 53 62.3
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.4e-11 70.9 51 70.6
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-11 70.5 51 68.6
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-11 70.5 51 68.6
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 4.5e-11 70.5 50 72.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 4.5e-11 70.5 50 72.0
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 4.5e-11 70.5 50 68.0
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 4.5e-11 70.5 52 67.3
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 4.5e-11 70.5 50 72.0
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.8e-11 70.1 50 70.0
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.8e-11 70.1 51 64.7
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.8e-11 70.1 50 72.0
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 7.6e-11 69.7 52 69.2
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 7.6e-11 69.7 53 66.0
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 9.9e-11 69.3 50 68.0
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 9.9e-11 69.3 51 66.7
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.3e-10 68.9 50 68.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-10 68.9 52 63.5
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.7e-10 68.6 51 68.6
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-10 68.6 50 70.0
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-10 68.6 49 67.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.2e-10 68.2 53 62.3
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 2.2e-10 68.2 50 68.0
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 3.8e-10 67.4 51 64.7
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 3.2e-09 64.3 52 61.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.2e-09 64.3 52 61.5
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 9.3e-09 62.8 50 60.0
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.2e-08 62.4 50 64.0
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 7.9e-08 59.7 38 73.7
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.8e-07 58.5 50 58.0
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 3.0e-07 57.8 50 56.0
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.9e-07 57.4 51 54.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.9e-07 57.4 78 46.2
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 6.7e-07 56.6 51 56.9
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.5e-06 55.5 51 54.9
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 3.3e-06 54.3 48 58.3


User provided reference genes

Program Settings