Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112750 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.4e-62 240.7 115 100.0
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 1.5e-24 116.3 105 59.0
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 2.6e-24 115.5 105 59.0
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 3.4e-24 115.2 105 58.1
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 3.4e-24 115.2 105 59.0
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 4.5e-24 114.8 105 58.1
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 4.5e-24 114.8 105 59.0
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 5.9e-24 114.4 105 57.1
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 5.9e-24 114.4 105 59.0
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 5.9e-24 114.4 105 58.1
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 7.6e-24 114.0 105 58.1
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 7.6e-24 114.0 105 59.0
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 7.6e-24 114.0 105 59.0
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 7.6e-24 114.0 105 58.1
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 1.3e-23 113.2 100 61.0
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 1.3e-23 113.2 105 57.1
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.7e-23 112.8 105 58.1
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 5.0e-23 111.3 105 55.2
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 1.9e-22 109.4 101 55.4
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 5.5e-22 107.8 105 56.2
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 1.9e-19 99.4 93 58.1
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 2.5e-19 99.0 105 54.3
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 4.3e-19 98.2 105 52.4
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 7.4e-19 97.4 105 49.5
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 9.7e-19 97.1 105 49.5
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 9.7e-19 97.1 105 50.5
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 1.6e-18 96.3 105 48.6
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 2.8e-18 95.5 105 49.5
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 4.8e-18 94.7 106 53.8
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 1.4e-17 93.2 106 50.9
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 1.8e-17 92.8 106 50.9
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 3.1e-17 92.0 99 57.6
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 6.9e-17 90.9 106 50.0
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 9.0e-17 90.5 106 50.9
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 9.0e-17 90.5 106 50.9
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 9.0e-17 90.5 105 49.5
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-16 90.1 105 49.5
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.5e-16 89.7 102 52.0
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 2.0e-16 89.4 105 48.6
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 2.0e-16 89.4 106 50.0
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 4.5e-16 88.2 105 47.6
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 4.5e-16 88.2 105 46.7
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 4.5e-16 88.2 106 48.1
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 5.9e-16 87.8 98 52.0
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 5.9e-16 87.8 106 50.0
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 7.7e-16 87.4 105 45.7
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 7.7e-16 87.4 106 48.1
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 1.0e-15 87.0 98 51.0
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.0e-15 87.0 106 47.2
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 1.0e-15 87.0 106 47.2
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 1.0e-15 87.0 106 46.2
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 1.7e-15 86.3 102 49.0
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 1.7e-15 86.3 106 46.2
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.7e-15 86.3 106 47.2
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 1.7e-15 86.3 101 49.5
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 1.7e-15 86.3 102 49.0
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 1.7e-15 86.3 106 47.2
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 2.2e-15 85.9 105 44.8
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.9e-15 85.5 102 46.1
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.9e-15 85.5 106 46.2
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 3.8e-15 85.1 101 47.5
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.0e-15 84.7 102 48.0
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.0e-15 84.7 101 49.5
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 5.0e-15 84.7 102 48.0
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 5.0e-15 84.7 106 46.2
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 5.0e-15 84.7 106 44.3
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 6.5e-15 84.3 102 48.0
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 6.5e-15 84.3 95 52.6
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 8.5e-15 84.0 106 46.2
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 8.5e-15 84.0 102 47.1
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.1e-14 83.6 106 44.3
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 1.1e-14 83.6 106 46.2
BcaC03g13561 Brassica carinata HOM05D001579 ORTHO05D017611 1.9e-14 82.8 98 45.9
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 2.5e-14 82.4 102 46.1
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 4.2e-14 81.6 102 46.1
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 4.2e-14 81.6 102 46.1
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 5.5e-14 81.3 99 47.5
Duzib248G0143 Durio zibethinus HOM05D001579 ORTHO05D003470 5.5e-14 81.3 90 50.0
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 7.2e-14 80.9 106 44.3
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 7.2e-14 80.9 102 46.1
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 9.4e-14 80.5 105 44.8
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 9.4e-14 80.5 102 47.1
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 9.4e-14 80.5 102 45.1
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.2e-13 80.1 105 44.8
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.2e-13 80.1 105 44.8
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.2e-13 80.1 105 44.8
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.6e-13 79.7 102 47.1
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 2.1e-13 79.3 102 44.1
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 2.7e-13 79.0 98 46.9
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 2.7e-13 79.0 102 47.1
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.7e-13 79.0 102 47.1
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 3.6e-13 78.6 105 43.8
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 3.6e-13 78.6 102 45.1
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 3.6e-13 78.6 102 44.1
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.6e-13 78.2 102 46.1
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 4.6e-13 78.2 102 47.1
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 7.9e-13 77.4 102 43.1
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 1.0e-12 77.0 98 43.9
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.0e-12 77.0 102 46.1
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.0e-12 77.0 102 45.1
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 1.0e-12 77.0 102 45.1
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.4e-12 76.6 102 47.1
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 1.4e-12 76.6 102 47.1
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 1.4e-12 76.6 102 47.1
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.4e-12 76.6 102 46.1
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 1.4e-12 76.6 102 44.1
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.8e-12 76.3 99 43.4
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.3e-12 75.9 102 42.2
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 2.3e-12 75.9 102 43.1
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 2.3e-12 75.9 106 40.6
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 2.3e-12 75.9 102 45.1
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 3.0e-12 75.5 102 45.1
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 3.0e-12 75.5 100 49.0
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 3.0e-12 75.5 100 49.0
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 3.0e-12 75.5 95 47.4
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.1e-11 73.6 102 45.1
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 1.1e-11 73.6 124 42.7
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.1e-11 73.6 102 43.1
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 1.5e-11 73.2 94 46.8
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 1.5e-11 73.2 95 47.4
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 2.0e-11 72.8 98 43.9
HanXRQChr14g0446281 Helianthus annuus HOM05D001579 ORTHO05D003470 2.5e-11 72.4 103 45.6
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 3.3e-11 72.0 104 39.4
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 4.3e-11 71.6 102 41.2
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 5.7e-11 71.2 105 41.0
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 5.7e-11 71.2 105 41.0
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 5.7e-11 71.2 104 39.4
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.7e-11 71.2 104 39.4
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.7e-11 71.2 104 39.4
SEGI_12575 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 5.7e-11 71.2 96 43.8
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 7.4e-11 70.9 100 49.0
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 7.4e-11 70.9 94 45.7
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 9.7e-11 70.5 104 39.4
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.3e-10 70.1 104 38.5
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.3e-10 70.1 104 40.4
C02p09550 Brassica napus HOM05D001579 ORTHO05D017611 2.2e-10 69.3 86 44.2
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.2e-10 69.3 104 39.4
Hma1.2p1_0633F.1_g192550 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.8e-10 68.9 93 43.0
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 2.8e-10 68.9 90 43.3
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 4.8e-10 68.2 107 36.4
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 4.8e-10 68.2 149 35.6
SHI02915 Sapria himalayana HOM05D001579 ORTHO05D003470 4.8e-10 68.2 75 45.3
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 6.3e-10 67.8 94 43.6
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 8.2e-10 67.4 99 40.4
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 8.2e-10 67.4 106 41.5
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 8.2e-10 67.4 104 38.5
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 8.2e-10 67.4 104 38.5
HPP92_002580 Vanilla planifolia HOM05D001579 ORTHO05D003470 8.2e-10 67.4 92 44.6
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.8e-09 66.2 104 38.5
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 1.8e-09 66.2 99 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 2.4e-09 65.9 103 37.9
A09p15640 Brassica napus HOM05D001579 ORTHO05D017611 3.1e-09 65.5 85 44.7
BraA01t04658Z Brassica rapa HOM05D001579 ORTHO05D017611 3.1e-09 65.5 85 44.7
BraA09t37204Z Brassica rapa HOM05D001579 ORTHO05D003470 3.1e-09 65.5 85 44.7
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.5e-08 63.2 49 67.3
A10p05500 Brassica napus HOM05D001579 ORTHO05D017611 2.0e-08 62.8 85 43.5
BraA10t42813Z Brassica rapa HOM05D001579 ORTHO05D017611 2.0e-08 62.8 85 43.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 3.4e-08 62.0 108 37.0
BcaC01g00633 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-07 59.7 41 63.4
Hma1.2p1_0681F.1_g202440 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 6.5e-07 57.8 71 49.3
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 6.5e-07 57.8 99 35.4
A03p60490 Brassica napus HOM05D001579 ORTHO05D017611 8.5e-07 57.4 78 41.0
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 8.5e-07 57.4 104 35.6
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 1.9e-06 56.2 104 37.5
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 4.2e-06 55.1 101 35.6
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 9.4e-06 53.9 101 33.7


User provided reference genes

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