Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112700 Cardamine hirsuta HOM05D005605 ORTHO05D007615 5.5e-144 515.0 393 100.0
AT2G21710 Arabidopsis thaliana HOM05D005605 ORTHO05D007615 8.2e-124 448.0 409 87.8
BcaC07g41121 Brassica carinata HOM05D005605 ORTHO05D007615 3.8e-121 439.1 409 86.8
BolC8t51688H Brassica oleracea HOM05D005605 ORTHO05D007615 3.8e-121 439.1 409 86.8
BcaB08g35002 Brassica carinata HOM05D005605 ORTHO05D007615 1.1e-120 437.6 409 86.8
Sp4g00860 Schrenkiella parvula HOM05D005605 ORTHO05D007615 1.1e-120 437.6 409 86.6
C08p41210 Brassica napus HOM05D005605 ORTHO05D007615 9.4e-120 434.5 414 85.3
A09p58000 Brassica napus HOM05D005605 ORTHO05D007615 1.6e-119 433.7 408 87.0
Thhalv10000085m.g Eutrema salsugineum HOM05D005605 ORTHO05D007615 3.6e-119 432.6 408 86.8
AL4G10940 Arabidopsis lyrata HOM05D005605 ORTHO05D007615 8.0e-119 431.4 395 88.6
BraA09t41190Z Brassica rapa HOM05D005605 ORTHO05D007615 1.4e-118 430.6 408 86.3
Aa31LG7G14820 Aethionema arabicum HOM05D005605 ORTHO05D007615 1.3e-113 414.1 408 84.1
BcaC07g41120 Brassica carinata HOM05D005605 ORTHO05D007615 1.0e-110 404.4 392 86.7
Carub.0004s0075 Capsella rubella HOM05D005605 ORTHO05D007615 5.7e-109 398.7 409 82.4
THA.LOC104824826 Tarenaya hassleriana HOM05D005605 ORTHO05D007615 2.7e-106 389.8 403 81.4
Gohir.D13G032600 Gossypium hirsutum HOM05D005605 ORTHO05D007615 2.9e-89 333.2 407 72.2
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 8.6e-89 331.6 395 73.7
Gohir.A13G034200 Gossypium hirsutum HOM05D005605 ORTHO05D007615 5.6e-88 328.9 387 74.4
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 2.3e-86 323.6 406 69.2
Migut.B00234 Erythranthe guttata HOM05D005605 ORTHO05D007615 2.3e-86 323.6 407 71.5
Cfa005000 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.3e-84 317.8 408 68.4
Prupe.8G096600 Prunus persica HOM05D005605 ORTHO05D007615 1.3e-84 317.8 411 70.8
Potri.009G116200 Populus trichocarpa HOM05D005605 ORTHO05D007615 8.3e-84 315.1 412 70.9
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 1.9e-83 313.9 404 71.3
Sabra09G0089200 Salix brachista HOM05D005605 ORTHO05D007615 4.1e-83 312.8 407 70.5
Lj5C196G6 Lonicera japonica HOM05D005605 ORTHO05D007615 9.2e-83 311.6 404 65.3
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 1.2e-82 311.2 416 69.7
CSS0037419 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 1.6e-82 310.8 408 71.3
RcHm_v2.0_Chr6g0264281 Rosa chinensis HOM05D005605 ORTHO05D007615 2.0e-82 310.5 404 71.8
Eucgr.I01271 Eucalyptus grandis HOM05D005605 ORTHO05D007615 3.5e-82 309.7 410 71.2
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 7.8e-82 308.5 399 69.2
PGR142G2567 Punica granatum HOM05D005605 ORTHO05D007615 2.3e-81 307.0 404 70.5
CSS0012215 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 3.0e-81 306.6 408 71.1
FAN15G0883 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.0e-81 306.6 412 70.4
Rhsim11G0177400 Rhododendron simsii HOM05D005605 ORTHO05D007615 3.0e-81 306.6 407 71.3
COL.COLO4_25933 Corchorus olitorius HOM05D005605 ORTHO05D007615 5.0e-81 305.8 401 70.8
MD05G1066000 Malus domestica HOM05D005605 ORTHO05D007615 1.9e-80 303.9 412 66.5
Sc18g0004450 Simmondsia chinensis HOM05D005605 ORTHO05D007615 2.5e-80 303.5 409 69.9
FvH4_2g08810 Fragaria vesca HOM05D005605 ORTHO05D007615 3.3e-80 303.1 400 71.2
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 4.3e-80 302.8 410 67.1
Hund00267 Selenicereus undatus HOM05D005605 ORTHO05D007615 4.3e-80 302.8 401 70.6
Sopen01g051820 Solanum pennellii HOM05D005605 ORTHO05D007615 5.6e-80 302.4 397 68.3
FAN20G2643 Fragaria x ananassa HOM05D005605 ORTHO05D007615 9.5e-80 301.6 400 71.2
PGSC0003DMG400000727 Solanum tuberosum HOM05D005605 ORTHO05D007615 9.5e-80 301.6 397 67.8
Solyc01g109630.4 Solanum lycopersicum HOM05D005605 ORTHO05D007615 1.2e-79 301.2 409 66.0
FAN24G2665 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.6e-79 299.7 400 71.0
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 6.2e-79 298.9 389 71.7
Cfa004997 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.1e-78 298.1 397 68.8
vmacro02103 Vaccinium macrocarpon HOM05D005605 ORTHO05D007615 1.1e-78 298.1 408 64.2
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 1.4e-78 297.7 407 66.1
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 1.8e-78 297.4 458 39.7
Aqoxy6G01115 Aquilegia oxysepala HOM05D005605 ORTHO05D007615 4.0e-78 296.2 396 69.4
Oeu015995.1 Olea europaea HOM05D005605 ORTHO05D007615 4.0e-78 296.2 399 67.7
ECA248G2826 Erigeron canadensis HOM05D005605 ORTHO05D007615 8.9e-78 295.0 414 63.8
Lj3g0011747 Lotus japonicus HOM05D005605 ORTHO05D007615 8.9e-78 295.0 401 66.8
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 1.2e-77 294.7 416 68.0
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 1.5e-77 294.3 395 67.1
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 1.5e-77 294.3 401 67.3
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 2.0e-77 293.9 394 68.5
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 2.0e-77 293.9 395 67.3
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 2.0e-77 293.9 414 69.1
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 4.4e-77 292.7 395 67.3
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 5.8e-77 292.4 408 67.2
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 5.8e-77 292.4 414 66.7
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 1.7e-76 290.8 415 65.3
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 2.9e-76 290.0 396 68.7
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 2.9e-76 290.0 396 67.2
Haze_02391 Corylus avellana HOM05D005605 ORTHO05D007615 3.7e-76 289.7 416 41.3
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 6.4e-76 288.9 396 64.9
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 8.3e-76 288.5 402 67.4
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 1.1e-75 288.1 394 68.5
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 3.5e-74 283.1 396 67.2
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 7.8e-74 282.0 402 66.7
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 6.6e-73 278.9 412 59.5
ATR0772G053 Amborella trichopoda HOM05D005605 ORTHO05D007615 1.6e-71 274.2 413 66.6
MBI02_g03744_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 4.7e-71 272.7 395 69.9
Peaxi162Scf00016g00735 Petunia axillaris HOM05D005605 ORTHO05D007615 8.1e-71 271.9 394 64.0
Cfa004998 Carpinus fangiana HOM05D005605 ORTHO05D007615 1.8e-70 270.8 399 51.4
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 5.2e-70 269.2 396 65.2
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 3.4e-69 266.5 404 65.3
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 3.2e-67 260.0 407 67.3
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 2.7e-66 256.9 396 65.2
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 3.5e-66 256.5 415 64.6
DCAR_001580 Daucus carota HOM05D005605 ORTHO05D007615 6.6e-65 252.3 411 64.5
Cpa.g.sc62.154 Carica papaya HOM05D005605 ORTHO05D007615 1.9e-64 250.8 395 38.0
CSS0010527 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 1.6e-63 247.7 408 66.4
Nitab4.5_0004172g0020 Nicotiana tabacum HOM05D005605 ORTHO05D007615 4.7e-63 246.1 382 63.6
CSS0044100 Camellia sinensis var. sinensis HOM05D005605 ORTHO05D007615 6.2e-63 245.7 408 65.9
Nitab4.5_0000308g0140 Nicotiana tabacum HOM05D005605 ORTHO05D007615 1.1e-62 245.0 347 59.9
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 3.2e-59 233.4 410 62.0
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 3.5e-58 229.9 400 63.0
Rhsim07G0028500 Rhododendron simsii HOM05D005605 ORTHO05D007615 7.3e-56 222.2 383 36.8
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 3.1e-54 216.9 408 61.3
Atru.chr5.3019 Acer truncatum HOM05D005605 ORTHO05D007615 2.2e-52 210.7 400 61.0
Hma1.2p1_0066F.1_g036400 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 1.9e-51 207.6 323 72.4
Actinidia00525 Actinidia chinensis HOM05D005605 ORTHO05D007615 4.8e-47 193.0 404 60.9
Phvul.011G045100 Phaseolus vulgaris HOM05D005605 ORTHO05D007615 9.9e-45 185.3 132 58.3
Lalb_Chr03g0025671 Lupinus albus HOM05D005605 ORTHO05D007615 1.7e-44 184.5 401 58.9
Glyma.11G117700 Glycine max HOM05D005605 ORTHO05D007615 1.9e-43 181.0 132 56.8
Haze_02444 Corylus avellana HOM05D005605 ORTHO05D007615 4.2e-43 179.9 121 64.5
Os07g0134700 Oryza sativa ssp. japonica HOM05D005605 ORTHO05D007615 5.4e-43 179.5 405 58.8
unitig_0.g65 Utricularia gibba HOM05D005605 ORTHO05D007615 2.7e-42 177.2 287 72.8
EL10Ac9g21723 Beta vulgaris HOM05D005605 ORTHO05D007615 6.0e-42 176.0 162 56.8
SGA_v2.0_scaffold58G20533 Striga asiatica HOM05D005605 ORTHO05D007615 6.7e-41 172.6 399 59.1
HPP92_026667 Vanilla planifolia HOM05D005605 ORTHO05D007615 6.7e-41 172.6 297 74.1
Nn5g29612 Nelumbo nucifera HOM05D005605 ORTHO05D007615 1.6e-39 167.9 146 61.6
CDE04G1094 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 1.5e-37 161.4 310 47.4
Zm00001eb299540 Zea mays HOM05D005605 ORTHO05D007615 1.3e-36 158.3 414 56.3
Haze_02447 Corylus avellana HOM05D005605 ORTHO05D007615 9.6e-32 142.1 123 53.7
Haze_02443 Corylus avellana HOM05D005605 ORTHO05D007615 4.9e-28 129.8 90 60.0
SEGI_23691 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 3.2e-27 127.1 411 48.7
SEGI_40488 Sequoiadendron giganteum HOM05D005605 ORTHO05D007615 1.6e-26 124.8 160 41.9
Glyma.11G117751 Glycine max HOM05D005605 ORTHO05D007615 1.0e-25 122.1 84 69.0
CDE04G2942 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 1.0e-20 105.5 76 65.8
SalBow6G1488 Salvia bowleyana HOM05D002700 ORTHO05D003228 2.2e-20 104.4 329 27.4
MBI02_g24399_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 5.0e-20 103.2 92 51.1
Thecc.02G085000 Theobroma cacao HOM05D005605 ORTHO05D007615 7.2e-19 99.4 69 62.3
SMO358G0083 Selaginella moellendorffii HOM05D005605 ORTHO05D007615 7.7e-13 79.3 382 46.9
Haze_02436 Corylus avellana HOM05D005605 ORTHO05D007615 2.1e-10 71.2 87 41.4
Pp3c3_15310 Physcomitrium patens HOM05D005605 ORTHO05D007615 3.0e-09 67.4 124 37.9
CDE04G2564 Ceratophyllum demersum HOM05D005605 ORTHO05D007615 5.1e-09 66.6 73 41.1
CARHR112720 Cardamine hirsuta HOM05D005605 ORTHO05D007615 7.4e-08 62.8 62 59.7


User provided reference genes

Program Settings