Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 7.2e-113 410.6 209 100.0
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.2e-94 350.1 205 89.8
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 3.5e-91 338.6 204 88.7
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 5.9e-91 337.8 207 86.5
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.7e-90 336.3 206 87.4
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.1e-89 333.6 206 84.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 6.8e-87 324.3 204 84.8
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 6.8e-87 324.3 204 84.8
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 3.1e-84 315.5 203 81.8
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 4.1e-84 315.1 212 79.7
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 5.4e-60 235.0 210 62.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 7.8e-43 177.9 153 58.8
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.7e-42 176.8 161 56.5
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.0e-42 176.0 151 62.3
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 1.1e-41 174.1 154 57.8
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 4.3e-41 172.2 124 66.9
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 9.6e-41 171.0 149 59.7
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.6e-40 170.2 136 63.2
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.1e-40 169.9 149 59.1
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.1e-40 169.9 200 50.5
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.8e-40 169.5 152 58.6
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 8.1e-40 167.9 168 54.8
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 8.1e-40 167.9 194 49.0
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 8.1e-40 167.9 194 49.0
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.1e-39 167.5 114 71.1
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.4e-39 167.2 147 57.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.4e-39 167.2 135 63.0
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.4e-39 166.4 200 49.0
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 3.1e-39 166.0 130 64.6
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 4.0e-39 165.6 148 58.1
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.0e-39 165.6 116 69.8
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 4.0e-39 165.6 134 59.7
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 4.0e-39 165.6 217 48.4
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 5.3e-39 165.2 205 47.8
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 6.9e-39 164.9 165 57.0
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 6.9e-39 164.9 142 59.2
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 9.0e-39 164.5 155 57.4
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.2e-38 164.1 185 51.9
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.2e-38 164.1 165 53.3
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.2e-38 164.1 199 49.7
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 2.0e-38 163.3 113 69.9
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.6e-38 162.9 151 55.6
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 2.6e-38 162.9 151 55.6
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 7.6e-38 161.4 196 49.5
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 9.9e-38 161.0 133 60.2
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.3e-37 160.6 127 60.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.3e-37 160.6 127 59.8
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.7e-37 160.2 123 62.6
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 1.7e-37 160.2 114 67.5
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 2.2e-37 159.8 114 66.7
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-37 159.8 139 55.4
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 2.2e-37 159.8 139 55.4
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 2.9e-37 159.5 111 70.3
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 6.4e-37 158.3 112 66.1
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.1e-36 157.5 172 53.5
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.1e-36 157.5 179 48.6
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.9e-36 156.8 145 57.2
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.9e-36 156.8 126 61.9
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.9e-36 156.8 126 61.9
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 1.9e-36 156.8 126 61.9
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 5.4e-36 155.2 198 46.5
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 1.2e-35 154.1 121 61.2
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.2e-35 154.1 180 48.9
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.2e-35 154.1 110 70.0
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 1.6e-35 153.7 209 46.9
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.6e-35 153.7 112 66.1
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 2.7e-35 152.9 118 60.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 6.0e-35 151.8 112 66.1
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 3.9e-34 149.1 172 48.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 5.1e-34 148.7 199 45.2
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 8.7e-34 147.9 118 61.9
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 8.7e-34 147.9 118 62.7
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.1e-33 147.5 172 48.8
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 3.3e-33 146.0 118 61.9
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 4.3e-33 145.6 120 60.8
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 5.6e-33 145.2 116 62.1
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 7.3e-33 144.8 195 43.6
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 7.3e-33 144.8 172 47.7
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.6e-32 143.7 135 52.6
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 3.6e-32 142.5 135 52.6
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.4e-31 140.6 164 49.4
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.4e-31 140.6 200 44.5
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.8e-31 140.2 164 47.0
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 1.8e-31 140.2 111 58.6
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 1.8e-31 140.2 153 48.4
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 4.0e-31 139.0 118 50.8
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 6.9e-31 138.3 111 59.5
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 7.6e-30 134.8 114 53.5
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 7.6e-30 134.8 149 44.3
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.3e-29 134.0 99 66.7
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.8e-29 132.5 130 52.3
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 5.4e-28 128.6 104 58.7
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.6e-24 117.1 189 40.2
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 8.1e-24 114.8 128 49.2
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.4e-23 113.2 89 64.0
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 5.3e-23 112.1 124 50.0
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 5.3e-23 112.1 84 65.5
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 1.3e-21 107.5 119 42.9
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 2.9e-21 106.3 96 56.2
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 5.5e-20 102.1 146 41.1
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 5.5e-20 102.1 146 41.1
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.2e-19 100.9 97 54.6
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 2.5e-17 93.2 155 36.8
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.6e-16 90.5 73 60.3
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 2.1e-16 90.1 114 40.4
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 4.8e-16 89.0 119 42.9
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.8e-15 87.0 114 43.9
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.3e-13 80.9 137 35.8
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 6.1e-11 72.0 108 36.1
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 4.1e-07 59.3 56 53.6


User provided reference genes

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