Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.8e-27 125.2 62 100.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.6e-23 112.1 62 88.7
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 3.5e-23 110.9 62 85.5
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.5e-23 110.9 62 85.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 4.6e-23 110.5 62 83.9
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 4.6e-23 110.5 62 83.9
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 4.6e-23 110.5 62 83.9
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 1.0e-22 109.4 62 83.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.7e-22 108.6 62 82.3
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.7e-22 108.6 62 83.9
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.3e-22 108.2 62 82.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.0e-22 107.8 62 80.6
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.0e-22 107.8 61 83.6
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 5.0e-22 107.1 62 82.3
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.5e-21 105.5 62 83.9
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 3.3e-21 104.4 62 82.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 7.3e-21 103.2 62 80.6
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 7.3e-21 103.2 62 80.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.3e-21 103.2 62 80.6
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 1.0e-19 99.4 61 73.8
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.4e-19 99.0 62 74.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.1e-19 97.8 60 70.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 4.0e-19 97.4 62 71.0
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.0e-19 97.4 62 71.0
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 6.8e-19 96.7 62 74.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 6.8e-19 96.7 62 74.2
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.8e-19 96.7 61 73.8
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.5e-18 95.5 62 69.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-18 95.5 61 70.5
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.0e-18 95.1 62 71.0
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 2.0e-18 95.1 62 69.4
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 4.4e-18 94.0 60 71.7
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.4e-18 94.0 61 68.9
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.4e-18 94.0 61 68.9
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.4e-18 94.0 61 68.9
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.4e-18 94.0 62 69.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 5.8e-18 93.6 61 67.2
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.5e-18 93.2 60 70.0
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 9.8e-18 92.8 61 68.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 9.8e-18 92.8 61 68.9
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.8e-18 92.8 62 67.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.3e-17 92.4 58 70.7
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.3e-17 92.4 61 67.2
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.7e-17 92.0 62 64.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.7e-17 92.0 62 64.5
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.7e-17 92.0 61 70.5
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.2e-17 91.7 62 64.5
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.9e-17 91.3 62 66.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 2.9e-17 91.3 61 67.2
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.7e-17 90.9 60 70.0
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.9e-17 90.5 61 65.6
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 8.3e-17 89.7 61 65.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 8.3e-17 89.7 61 65.6
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 8.3e-17 89.7 62 64.5
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 8.3e-17 89.7 62 64.5
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.1e-16 89.4 62 62.9
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 1.1e-16 89.4 61 65.6
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.1e-16 89.4 62 64.5
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 1.4e-16 89.0 61 65.6
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.9e-16 88.6 60 66.7
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.4e-16 88.2 62 64.5
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.4e-16 88.2 61 65.6
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.4e-16 88.2 62 64.5
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.2e-16 87.8 62 61.3
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.1e-16 87.4 61 68.9
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.1e-16 87.4 62 59.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 5.4e-16 87.0 61 60.7
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 5.4e-16 87.0 62 64.5
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 9.2e-16 86.3 61 60.7
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 9.2e-16 86.3 62 62.9
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-15 85.9 60 65.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 1.2e-15 85.9 60 65.0
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.2e-15 85.9 60 61.7
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.6e-15 85.5 61 63.9
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.0e-15 85.1 60 65.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.0e-15 85.1 61 63.9
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.7e-15 84.7 61 67.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.7e-15 84.7 62 61.3
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.5e-15 84.3 57 63.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.5e-15 84.3 62 64.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 3.5e-15 84.3 62 61.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.5e-15 84.3 62 59.7
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 4.6e-15 84.0 62 59.7
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 4.6e-15 84.0 62 62.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.6e-15 84.0 61 63.9
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 4.6e-15 84.0 61 63.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 6.0e-15 83.6 62 56.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.8e-15 83.2 63 65.1
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 1.0e-14 82.8 61 59.0
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.0e-14 82.8 61 57.4
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.0e-14 82.8 61 59.0
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.7e-14 82.0 63 65.1
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-14 82.0 63 65.1
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.7e-14 82.0 63 65.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 2.3e-14 81.6 63 63.5
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.3e-14 81.6 60 61.7
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.0e-14 81.3 93 49.5
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.9e-14 80.9 62 58.1
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.6e-14 80.1 54 66.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 8.6e-14 79.7 61 55.7
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 8.6e-14 79.7 61 55.7
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.5e-13 79.0 61 57.4
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.5e-13 79.0 63 57.1
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.5e-13 79.0 61 60.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 2.5e-13 78.2 59 55.9
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 4.3e-13 77.4 61 55.7
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.3e-13 77.4 61 55.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.3e-13 77.4 60 61.7
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 9.5e-13 76.3 61 62.3
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-12 75.5 61 52.5
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.6e-12 75.5 60 60.0
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.1e-12 75.1 63 54.0
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.8e-12 74.7 60 55.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.2e-12 73.6 61 52.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 6.2e-12 73.6 61 54.1
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.1e-11 72.8 62 50.0
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.8e-11 70.1 62 53.2
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.0e-10 68.6 60 53.3
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 3.4e-10 67.8 47 63.8
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.4e-10 67.8 60 46.7
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 5.8e-10 67.0 59 49.2
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 7.5e-10 66.6 46 65.2
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 7.5e-10 66.6 54 59.3
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 7.5e-10 66.6 60 45.0
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 7.5e-10 66.6 62 54.8
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-09 65.5 60 51.7
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.7e-09 65.5 55 49.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.2e-09 65.1 49 63.3
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.2e-09 65.1 62 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 8.3e-09 63.2 60 43.3
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.1e-08 62.8 59 47.5
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.4e-08 61.6 60 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.4e-08 61.6 60 43.3
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.4e-08 61.6 52 53.8
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 2.4e-08 61.6 55 43.6
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.1e-08 60.8 59 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-08 60.5 60 41.7
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 7.1e-08 60.1 44 61.4
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.6e-07 58.9 60 46.7
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.7e-07 58.2 62 41.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.9e-06 54.3 50 50.0
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.1e-06 53.9 34 67.6


User provided reference genes

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