Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 1.5e-47 192.6 99 100.0
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 2.0e-41 172.2 99 89.9
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 3.5e-41 171.4 99 89.9
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 1.0e-40 169.9 99 88.9
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 2.9e-40 168.3 99 87.9
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 5.5e-39 164.1 99 88.9
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 1.4e-34 149.4 99 79.8
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 3.5e-33 144.8 98 77.6
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 3.5e-33 144.8 98 77.6
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 1.3e-32 142.9 98 76.5
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 3.8e-32 141.4 99 77.8
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 3.8e-32 141.4 99 77.8
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 6.6e-32 140.6 98 79.6
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.1e-31 139.8 98 77.6
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 7.3e-31 137.1 98 76.5
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 1.2e-30 136.3 98 78.6
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 7.5e-28 127.1 96 75.0
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 2.2e-27 125.6 96 74.0
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 8.3e-27 123.6 99 68.7
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 1.4e-26 122.9 102 68.6
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 1.4e-26 122.9 99 68.7
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 3.2e-26 121.7 99 69.7
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 3.2e-26 121.7 99 66.7
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 2.7e-25 118.6 99 67.7
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 4.6e-25 117.9 100 67.0
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 4.6e-25 117.9 99 64.6
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 7.8e-25 117.1 99 65.7
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 1.0e-24 116.7 97 67.0
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 1.0e-24 116.7 96 66.7
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 2.3e-24 115.5 99 62.6
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 3.0e-24 115.2 99 63.6
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 3.0e-24 115.2 96 68.8
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 3.9e-24 114.8 99 63.6
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 3.9e-24 114.8 97 64.9
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 5.0e-24 114.4 100 65.0
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 5.0e-24 114.4 96 67.7
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 8.6e-24 113.6 99 63.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 8.6e-24 113.6 99 65.7
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 8.6e-24 113.6 99 62.6
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 1.1e-23 113.2 99 61.6
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.5e-23 112.8 99 62.6
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 1.5e-23 112.8 99 64.6
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.9e-23 112.5 99 62.6
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 5.6e-23 110.9 101 62.4
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 7.3e-23 110.5 101 64.4
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 7.3e-23 110.5 87 70.1
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 9.5e-23 110.2 99 60.6
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 9.5e-23 110.2 99 62.6
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 9.5e-23 110.2 99 62.6
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 2.1e-22 109.0 99 61.6
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 2.1e-22 109.0 96 63.5
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 2.8e-22 108.6 95 64.2
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.8e-22 108.6 95 64.2
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 3.6e-22 108.2 99 60.6
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 6.2e-22 107.5 99 61.6
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 8.0e-22 107.1 99 61.6
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 5.2e-21 104.4 96 61.5
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 6.8e-21 104.0 99 55.6
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 6.8e-21 104.0 99 56.6
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 6.8e-21 104.0 99 57.6
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 1.2e-20 103.2 87 69.0
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 1.2e-20 103.2 99 61.6
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.5e-20 102.8 99 60.6
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.5e-20 102.8 99 60.6
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 4.4e-20 101.3 97 57.7
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 5.8e-20 100.9 96 62.5
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 5.8e-20 100.9 99 61.6
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 7.5e-20 100.5 102 59.8
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 7.5e-20 100.5 97 59.8
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 9.8e-20 100.1 100 61.0
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 9.8e-20 100.1 64 79.7
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 9.8e-20 100.1 64 79.7
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.3e-19 99.8 87 65.5
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.7e-19 99.4 101 58.4
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 1.7e-19 99.4 86 67.4
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 2.2e-19 99.0 96 58.3
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.9e-19 98.6 90 62.2
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 3.7e-19 98.2 53 86.8
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 3.7e-19 98.2 66 75.8
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 4.9e-19 97.8 69 71.0
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 8.3e-19 97.1 100 56.0
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 1.1e-18 96.7 101 56.4
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 1.4e-18 96.3 87 64.4
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 1.9e-18 95.9 82 65.9
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 5.4e-18 94.4 98 59.2
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 7.0e-18 94.0 86 64.0
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 1.2e-17 93.2 52 84.6
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 1.6e-17 92.8 99 54.5
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 2.0e-17 92.4 87 64.4
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 4.6e-17 91.3 86 60.5
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 7.8e-17 90.5 87 58.6
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 1.0e-16 90.1 80 63.8
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 3.0e-16 88.6 86 58.1
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.9e-15 85.9 87 60.9
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 1.9e-15 85.9 86 61.6
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 2.8e-14 82.0 82 61.0
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 4.7e-14 81.3 81 58.0
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 1.1e-13 80.1 81 56.8
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 2.0e-12 75.9 84 52.4
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 1.7e-11 72.8 50 80.0
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 2.2e-11 72.4 52 76.9
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 2.9e-11 72.0 40 87.5
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 2.9e-11 72.0 86 52.3
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 8.3e-11 70.5 88 50.0
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 1.4e-10 69.7 58 67.2
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 5.4e-10 67.8 87 49.4
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 1.6e-09 66.2 71 59.2
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 4.6e-09 64.7 85 48.2
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 3.0e-08 62.0 56 58.9
Aa31LG7G15350 Aethionema arabicum HOM05D007135 ORTHO05D008880 3.9e-08 61.6 67 56.7
RhsimUnG0003900 Rhododendron simsii HOM05D004431 ORTHO05D005053 4.7e-06 54.7 47 70.2
RhsimUnG0067300 Rhododendron simsii HOM05D004431 ORTHO05D005053 4.7e-06 54.7 47 70.2


User provided reference genes

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