Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 8.8e-151 537.0 278 100.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 2.1e-128 462.6 274 89.1
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.4e-126 454.9 266 89.1
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.4e-124 449.1 275 86.2
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.3e-117 424.1 276 80.8
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-105 387.1 270 77.4
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 7.3e-105 384.4 269 77.7
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 4.7e-104 381.7 204 94.6
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 9.0e-103 377.5 262 78.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 3.4e-102 375.6 275 74.9
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-101 373.6 267 77.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.3e-101 373.6 262 77.9
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 8.4e-101 370.9 267 77.5
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 6.4e-93 344.7 261 70.1
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 6.4e-93 344.7 262 70.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.4e-92 341.7 264 68.9
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 5.4e-92 341.7 260 70.4
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 1.3e-90 337.0 248 71.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.7e-90 334.3 264 67.4
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.9e-89 333.2 258 69.8
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 3.3e-89 332.4 253 71.1
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.6e-89 331.6 264 67.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 9.6e-89 330.9 269 65.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 9.6e-89 330.9 204 80.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.8e-88 329.3 202 80.7
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 3.7e-88 328.9 263 67.3
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-87 327.4 254 71.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.4e-87 326.2 263 66.5
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 9.0e-87 324.3 244 68.4
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.0e-86 323.2 211 77.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.0e-86 323.2 253 68.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 7.6e-86 321.2 243 69.5
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 9.9e-86 320.9 246 69.9
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.7e-85 320.1 254 68.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.7e-85 320.1 223 75.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-85 320.1 242 69.4
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-85 320.1 202 79.7
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-85 320.1 202 79.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.7e-85 320.1 237 71.7
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.9e-85 318.5 252 69.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.4e-85 318.2 232 70.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.4e-85 317.8 204 78.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 8.4e-85 317.8 253 68.0
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 4.2e-84 315.5 245 67.8
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 4.2e-84 315.5 261 65.1
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.2e-84 315.5 216 75.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.1e-84 314.7 229 71.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.1e-84 314.7 245 67.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.1e-84 314.7 204 77.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.3e-84 314.3 231 69.3
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 9.3e-84 314.3 274 65.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.7e-83 312.8 268 65.3
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 7.9e-83 311.2 209 74.2
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.8e-82 310.1 242 66.5
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 3.0e-82 309.3 205 77.1
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.9e-82 308.9 239 69.0
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.1e-82 308.5 193 80.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 5.1e-82 308.5 211 73.9
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.1e-82 308.5 226 69.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.7e-82 308.1 225 70.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-82 307.8 255 65.1
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.7e-82 307.8 255 64.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.1e-81 307.4 236 70.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.9e-81 306.6 204 75.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.5e-81 306.2 208 74.0
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.5e-81 306.2 204 74.5
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 3.3e-81 305.8 193 79.3
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.3e-81 305.4 242 69.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 4.3e-81 305.4 204 75.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 5.6e-81 305.1 255 63.5
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 7.4e-81 304.7 200 76.5
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.6e-81 304.3 233 70.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 9.6e-81 304.3 242 64.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.3e-80 303.9 252 64.7
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.3e-80 303.9 235 65.5
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.3e-80 303.9 209 74.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.7e-80 302.4 242 69.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 3.7e-80 302.4 213 70.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.8e-80 302.0 260 65.8
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.2e-80 301.6 205 75.1
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 6.2e-80 301.6 280 62.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 6.2e-80 301.6 210 71.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.2e-80 301.2 204 73.0
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-79 300.8 261 61.3
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.1e-79 300.8 204 73.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.4e-79 300.4 193 77.7
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 3.1e-79 299.3 212 71.2
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 4.0e-79 298.9 239 66.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 5.3e-79 298.5 204 72.5
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.3e-79 298.5 204 72.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 6.9e-79 298.1 204 73.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.9e-79 298.1 210 71.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 9.0e-79 297.7 210 71.0
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.0e-78 296.6 228 69.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 2.0e-78 296.6 251 65.3
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.4e-78 295.8 212 70.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 5.8e-78 295.0 201 73.1
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.0e-77 294.3 263 65.4
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.7e-77 293.5 207 70.5
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.1e-76 290.8 206 70.4
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.1e-76 290.8 250 63.6
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-76 290.4 239 69.0
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 5.5e-76 288.5 236 66.9
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.8e-74 283.5 194 74.2
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.8e-74 283.5 193 72.5
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.0e-74 282.7 220 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.1e-74 282.0 197 70.6
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.1e-73 280.8 185 76.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.1e-73 280.8 198 69.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.9e-73 280.0 227 63.4
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 9.7e-73 277.7 193 72.0
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.8e-72 276.2 214 65.9
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.7e-72 275.8 236 60.6
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 3.7e-72 275.8 194 72.2
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.8e-71 273.5 208 65.4
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.4e-71 273.1 198 69.7
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 9.0e-71 271.2 177 79.7
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 3.8e-69 265.8 177 76.8
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 7.9e-67 258.1 177 73.4
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.4e-66 257.3 200 69.5
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 3.9e-66 255.8 177 74.0
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.1e-65 254.2 179 71.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.3e-65 252.3 202 65.3
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 6.9e-63 245.0 184 71.7
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 5.0e-61 238.8 236 56.4
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.9e-59 231.5 213 57.3
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 4.4e-57 225.7 214 55.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.7e-56 223.8 229 51.1
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.1e-55 219.5 165 68.5
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.1e-55 219.5 165 68.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 2.1e-51 206.8 209 57.4
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.3e-50 203.4 177 63.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.3e-49 199.5 241 48.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-46 191.0 130 73.8
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.9e-46 188.7 197 50.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.7e-41 171.4 177 51.4
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 9.7e-41 171.4 106 77.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 4.5e-38 162.5 106 75.5
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 8.8e-34 148.3 207 43.5
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 4.4e-33 146.0 88 78.4
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.9e-30 135.6 87 73.6
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-28 130.6 224 41.1
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.6e-25 120.2 244 36.5
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 9.8e-25 118.2 217 36.4
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 5.4e-23 112.5 209 32.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 2.0e-22 110.5 86 65.1
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.9e-21 106.7 188 34.6
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.5e-20 104.4 70 72.9
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 9.5e-20 101.7 127 47.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.4e-18 97.8 205 33.2
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.4e-15 87.0 69 65.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.7e-13 80.9 110 43.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.5e-12 77.8 111 45.9
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.9e-12 77.4 44 84.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 9.5e-12 75.1 65 61.5
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 2.1e-11 73.9 54 72.2
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 2.1e-11 73.9 54 72.2
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 8.0e-11 72.0 50 76.0
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 4.1e-07 59.7 62 56.5


User provided reference genes

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