Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 8.9e-99 363.6 185 100.0
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 2.1e-84 315.8 184 87.5
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 8.1e-84 313.9 190 85.3
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 3.1e-83 312.0 182 86.8
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 2.0e-82 309.3 185 86.5
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 2.9e-81 305.4 184 84.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 4.3e-77 291.6 184 81.5
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 4.3e-77 291.6 184 81.5
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 4.3e-77 291.6 184 81.5
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 1.3e-76 290.0 186 79.0
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 1.6e-76 289.7 188 80.3
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.1e-75 287.0 188 79.8
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 9.9e-74 280.4 170 82.4
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 2.1e-68 262.7 185 73.0
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 6.0e-63 244.6 181 67.4
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 2.3e-62 242.7 191 67.5
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 2.1e-60 236.1 172 70.3
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 2.2e-57 226.1 186 62.9
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 4.9e-57 224.9 167 68.3
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 4.9e-57 224.9 190 61.1
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 6.5e-57 224.6 189 61.9
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.1e-56 223.8 191 64.4
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 1.4e-56 223.4 167 68.3
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 4.2e-56 221.9 188 61.7
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 2.7e-55 219.2 167 65.3
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 2.7e-55 219.2 179 64.2
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 7.9e-55 217.6 191 61.8
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.8e-54 216.5 189 60.3
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 1.8e-54 216.5 174 62.6
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 3.0e-54 215.7 191 58.1
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 3.9e-54 215.3 192 60.4
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 5.1e-54 214.9 190 59.5
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 8.7e-54 214.2 185 61.1
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 8.7e-54 214.2 192 59.9
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.1e-53 213.8 187 62.0
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.1e-53 213.8 188 60.6
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 1.5e-53 213.4 191 60.7
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 1.9e-53 213.0 171 62.6
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 2.5e-53 212.6 187 58.8
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 4.3e-53 211.8 170 63.5
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 5.7e-53 211.5 166 65.1
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 5.7e-53 211.5 187 59.4
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 5.7e-53 211.5 192 59.4
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 5.7e-53 211.5 169 62.7
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 7.4e-53 211.1 185 58.4
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 7.4e-53 211.1 184 60.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 7.4e-53 211.1 184 60.9
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 9.6e-53 210.7 171 63.7
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.6e-52 209.9 188 59.0
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.6e-52 209.9 172 62.2
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.1e-52 209.5 191 60.2
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 2.1e-52 209.5 184 58.2
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 2.8e-52 209.1 188 59.6
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 8.2e-52 207.6 182 60.4
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 1.4e-51 206.8 174 59.8
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.1e-51 205.7 171 61.4
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 4.1e-51 205.3 180 58.3
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 4.1e-51 205.3 186 58.6
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 9.0e-51 204.1 181 57.5
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.5e-50 203.4 181 57.5
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 2.6e-50 202.6 181 57.5
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 4.5e-50 201.8 186 56.5
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 5.9e-50 201.4 181 56.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 5.9e-50 201.4 191 57.1
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 7.6e-50 201.1 182 57.7
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 1.3e-49 200.3 165 61.2
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.9e-49 199.1 170 60.0
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 8.5e-49 197.6 170 58.2
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 1.1e-48 197.2 198 54.5
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.1e-48 197.2 174 56.3
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 7.2e-48 194.5 189 54.5
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 9.3e-48 194.1 176 58.0
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 1.2e-47 193.7 182 54.4
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 2.1e-47 193.0 189 53.4
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.1e-47 193.0 192 52.6
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 4.6e-47 191.8 197 53.3
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 7.9e-47 191.0 190 53.7
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 3.0e-46 189.1 137 67.2
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 3.9e-46 188.7 155 61.3
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 6.7e-46 188.0 190 55.3
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 8.7e-46 187.6 141 64.5
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 2.5e-45 186.0 153 57.5
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 3.3e-45 185.7 189 53.4
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 7.4e-45 184.5 297 40.4
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 9.7e-45 184.1 168 54.2
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.6e-44 183.3 189 52.9
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.6e-44 183.3 158 56.3
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 2.8e-44 182.6 163 57.1
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 4.8e-44 181.8 169 53.3
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 6.3e-44 181.4 165 54.5
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 6.3e-44 181.4 162 57.4
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 1.8e-43 179.9 168 55.4
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 5.9e-42 174.9 127 70.9
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 8.5e-41 171.0 179 53.6
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 1.6e-39 166.8 139 55.4
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 1.8e-38 163.3 127 66.9
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 3.1e-35 152.5 111 68.5
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 3.1e-35 152.5 152 44.7
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 5.0e-33 145.2 197 46.7
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 6.5e-33 144.8 122 60.7
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 6.5e-33 144.8 134 50.7
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 2.1e-31 139.8 163 44.8
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.4e-29 132.1 118 49.2
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.8e-28 129.4 92 65.2
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 7.0e-27 124.8 167 43.7
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.6e-26 123.6 122 53.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 2.2e-25 119.8 123 49.6
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 7.0e-19 98.2 97 45.4
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 4.2e-16 89.0 136 38.2
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 5.5e-16 88.6 154 39.6
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 9.4e-16 87.8 140 38.6
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.5e-13 80.5 63 57.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.4e-13 79.3 64 71.9


User provided reference genes

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