Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 8.1e-149 530.4 271 100.0
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 1.6e-133 479.6 271 89.7
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 2.0e-131 472.6 271 88.2
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 1.3e-127 459.9 271 86.0
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 1.3e-125 453.4 271 86.3
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.1e-124 448.7 271 83.8
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 2.6e-123 445.7 271 83.0
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 2.6e-123 445.7 271 83.0
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 2.6e-123 445.7 271 83.0
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 7.6e-123 444.1 271 82.7
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 7.6e-123 444.1 271 82.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.2e-122 442.6 271 82.7
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 6.5e-106 387.9 271 73.8
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.4e-92 343.6 271 66.1
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 6.3e-77 291.6 276 58.3
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 4.7e-72 275.4 276 57.2
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 6.7e-71 271.6 275 56.7
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 2.2e-69 266.5 276 52.9
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 3.7e-69 265.8 279 53.4
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 3.7e-69 265.8 275 54.9
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 8.2e-69 264.6 275 54.2
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 1.4e-68 263.8 275 53.5
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.4e-68 263.8 276 52.9
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.4e-68 263.1 278 54.0
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.6e-67 260.4 278 53.6
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 2.0e-67 260.0 276 54.7
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 4.5e-67 258.8 276 51.8
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 3.8e-66 255.8 302 48.7
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 8.5e-66 254.6 276 54.3
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 8.5e-66 254.6 276 52.2
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.1e-65 254.2 273 53.1
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 3.2e-65 252.7 277 53.1
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 6.1e-64 248.4 276 51.1
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.8e-63 246.9 276 51.1
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 1.5e-62 243.8 276 50.7
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 1.5e-62 243.8 276 51.8
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.2e-61 240.0 278 50.7
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 2.8e-61 239.6 276 51.4
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.7e-61 239.2 276 51.8
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 3.7e-61 239.2 277 50.5
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 4.8e-61 238.8 276 51.1
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 1.8e-60 236.9 277 48.7
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 2.4e-60 236.5 276 50.7
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 1.6e-59 233.8 279 49.8
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 7.7e-59 231.5 276 49.3
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 1.3e-58 230.7 282 50.0
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 1.7e-58 230.3 276 48.6
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.3e-58 229.9 274 50.4
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 2.3e-58 229.9 276 50.7
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 2.3e-58 229.9 275 48.7
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 2.9e-58 229.6 276 47.8
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 2.9e-58 229.6 279 49.5
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 3.8e-58 229.2 275 49.1
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 5.0e-58 228.8 275 49.8
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 8.6e-58 228.0 276 49.6
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 1.1e-57 227.6 277 48.0
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.1e-57 227.6 276 50.0
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 3.3e-57 226.1 273 49.5
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 3.3e-57 226.1 275 49.8
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 9.5e-57 224.6 273 49.5
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 1.6e-56 223.8 281 47.3
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 2.8e-56 223.0 283 48.4
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.6e-56 222.6 276 48.6
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 4.7e-56 222.2 251 50.6
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 4.7e-56 222.2 261 51.3
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 8.0e-56 221.5 251 50.2
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.3e-55 219.9 217 55.3
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 3.0e-55 219.5 261 49.4
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 5.2e-55 218.8 258 49.6
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 8.9e-55 218.0 275 48.0
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.2e-54 217.6 293 47.1
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.4e-54 215.7 244 50.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 7.5e-54 214.9 266 46.2
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 2.2e-53 213.4 257 48.2
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 2.8e-53 213.0 273 48.4
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 5.4e-52 208.8 273 46.5
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.2e-51 207.6 275 46.9
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.1e-49 201.1 273 45.1
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 3.3e-49 199.5 288 44.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 7.3e-49 198.4 277 45.1
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 9.5e-49 198.0 226 51.8
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 1.2e-48 197.6 273 43.6
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 3.0e-47 193.0 280 45.0
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 6.8e-47 191.8 101 94.1
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 2.6e-46 189.9 225 51.6
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 1.9e-44 183.7 226 46.5
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 6.0e-43 178.7 256 44.9
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 3.1e-39 166.4 280 41.8
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 3.1e-39 166.4 277 39.0
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 3.1e-31 139.8 278 38.1
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 1.5e-30 137.5 246 38.6
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 3.6e-24 116.3 140 50.0
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 8.1e-24 115.2 171 46.8
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 2.6e-22 110.2 152 45.4
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 4.4e-22 109.4 136 46.3
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 2.2e-21 107.1 252 35.7
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 1.9e-17 94.0 138 44.2
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 9.6e-17 91.7 122 46.7
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 3.6e-16 89.7 126 45.2
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 6.2e-16 89.0 213 32.9
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 4.0e-15 86.3 258 29.5
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 2.0e-14 84.0 137 38.0
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 3.2e-12 76.6 205 32.7
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.2e-11 74.7 124 41.9
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.8e-07 60.8 98 41.8
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 3.4e-06 56.6 92 41.3


User provided reference genes

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