Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 4.6e-310 1067.0 521 100.0
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 4.8e-299 1030.4 521 95.2
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.5e-297 1025.4 521 95.4
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.0e-297 1025.0 521 95.2
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 1.3e-296 1022.3 521 94.8
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.8e-296 1020.8 521 94.6
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.3e-288 995.7 520 90.6
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.7e-288 995.3 521 91.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 3.8e-288 994.2 521 91.0
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 4.9e-288 993.8 521 91.2
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 4.9e-288 993.8 521 91.2
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-287 992.6 521 91.0
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.5e-287 990.3 521 90.6
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-286 989.2 520 90.4
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.2e-286 989.2 520 90.4
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-286 988.4 521 90.6
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 3.5e-286 987.6 521 90.4
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 3.5e-286 987.6 521 90.4
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 6.7e-285 983.4 520 89.4
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 8.7e-285 983.0 520 89.4
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 1.1e-284 982.6 522 90.2
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 5.3e-282 973.8 525 89.3
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 5.7e-276 953.7 521 87.1
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.3e-268 927.9 521 84.5
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 9.1e-266 919.8 521 82.7
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 5.0e-264 914.1 521 83.1
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 6.1e-262 907.1 521 81.4
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.0e-261 906.4 521 81.8
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 3.3e-260 901.4 521 81.4
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.1e-258 896.3 519 80.9
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.4e-258 896.0 521 80.8
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.4e-258 895.2 518 81.5
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.4e-258 895.2 519 81.5
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 7.0e-258 893.6 517 81.0
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 7.0e-258 893.6 519 80.7
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.6e-257 892.5 521 80.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.7e-257 890.2 521 80.0
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 6.5e-256 887.1 517 81.2
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 1.1e-255 886.3 519 80.2
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.5e-255 885.9 521 81.2
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.9e-255 885.6 529 79.2
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.9e-255 885.6 520 80.2
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.5e-255 885.2 521 78.7
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 3.2e-255 884.8 521 79.5
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.2e-255 884.8 520 79.8
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.2e-255 884.4 519 80.7
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 5.5e-255 884.0 519 80.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 529 79.2
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 529 79.4
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 1.2e-254 882.9 522 80.7
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.6e-254 882.5 514 80.9
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 3.6e-254 881.3 545 76.7
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 4.7e-254 880.9 529 79.2
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.8e-253 879.0 521 79.3
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.0e-253 877.9 521 79.5
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.0e-253 877.9 521 79.7
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 4.0e-253 877.9 521 79.7
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 5.2e-253 877.5 521 78.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 5.2e-253 877.5 520 79.2
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 3.3e-252 874.8 517 79.7
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 6.3e-251 870.5 519 78.6
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 8.2e-251 870.2 511 80.8
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 1.8e-250 869.0 521 78.5
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.4e-250 868.6 545 75.8
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 7.0e-250 867.1 531 78.0
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.2e-249 866.3 521 77.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 7.7e-249 863.6 521 78.7
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 3.8e-248 861.3 521 77.4
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.5e-247 858.6 521 78.7
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 4.2e-247 857.8 522 77.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.1e-246 855.5 522 76.8
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 2.1e-246 855.5 521 77.2
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 3.6e-246 854.7 522 77.6
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 8.0e-246 853.6 521 77.2
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 1.4e-245 852.8 527 76.5
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 1.8e-245 852.4 522 76.8
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 3.0e-245 851.7 518 78.4
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 3.0e-245 851.7 521 77.7
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.0e-245 851.3 519 76.9
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.6e-244 848.6 521 76.4
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 4.4e-244 847.8 521 76.8
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 5.7e-244 847.4 521 77.2
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.3e-243 846.3 519 77.6
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.4e-242 842.8 555 73.9
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 1.4e-242 842.8 521 77.2
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 3.1e-242 841.6 515 76.9
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 4.1e-242 841.3 521 77.0
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 9.1e-242 840.1 521 76.6
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 4.5e-241 837.8 518 76.8
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 4.5e-241 837.8 521 76.6
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 5.9e-241 837.4 521 76.6
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 1.0e-240 836.6 517 76.8
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 1.3e-240 836.3 520 75.2
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 3.3e-239 831.6 521 76.8
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.2e-238 829.7 467 84.2
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.6e-238 829.3 521 75.8
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 6.1e-238 827.4 493 78.9
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.0e-237 826.6 523 75.3
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 4.0e-237 824.7 518 75.1
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 2.0e-236 822.4 523 75.3
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 9.8e-236 820.1 521 74.9
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 2.8e-235 818.5 521 75.4
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.0e-233 812.4 525 73.9
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 3.5e-233 811.6 520 74.0
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 5.9e-233 810.8 522 73.6
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.7e-232 809.3 521 73.7
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 1.7e-232 809.3 465 82.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.8e-232 808.1 519 75.3
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 8.6e-232 807.0 531 72.9
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 1.5e-231 806.2 521 74.1
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 4.3e-231 804.7 520 72.7
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 4.7e-230 801.2 467 81.6
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.3e-229 798.9 517 74.5
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 4.0e-229 798.1 517 74.7
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 4.0e-229 798.1 520 72.7
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 4.0e-229 798.1 516 73.6
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 4.4e-228 794.7 473 78.2
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 7.5e-228 793.9 477 77.6
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 1.7e-227 792.7 468 79.1
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.2e-227 792.3 491 76.6
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 1.6e-225 786.2 554 69.9
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.6e-225 784.6 521 72.9
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 6.0e-225 784.3 550 69.5
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 1.5e-223 779.6 562 70.1
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 1.9e-223 779.2 470 78.5
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 2.5e-223 778.9 517 71.2
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.7e-222 774.6 471 76.9
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 6.2e-222 774.2 520 71.2
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.2e-220 770.0 574 66.7
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 2.2e-219 765.8 521 69.9
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 3.7e-219 765.0 519 70.9
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 9.2e-218 760.4 521 69.5
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 7.8e-217 757.3 521 69.9
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.9e-216 755.0 521 71.0
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.5e-215 753.1 521 69.5
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 5.2e-213 744.6 521 69.5
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.2e-212 743.4 521 69.5
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.1e-205 720.3 541 65.1
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 5.1e-200 701.4 520 66.5
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.9e-199 699.5 521 65.5
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 5.8e-196 688.0 504 70.0
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 3.6e-190 668.7 383 80.9
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 7.1e-186 654.4 381 80.1
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.2e-185 653.7 383 80.4
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 2.5e-183 646.0 562 59.3
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 2.8e-182 642.5 480 64.8
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 2.1e-177 626.3 481 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 1.8e-173 613.2 487 60.6
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.0e-168 597.4 446 62.6
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 3.0e-160 569.3 293 92.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 4.1e-157 558.9 473 56.9
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 9.4e-154 547.7 513 54.0
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 3.7e-142 509.2 353 69.4
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 2.5e-130 469.9 286 76.6
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 2.3e-128 463.4 292 75.0
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 9.8e-127 458.0 266 77.4
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 3.7e-126 456.1 289 75.8
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 1.2e-124 451.1 289 75.4
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.0e-107 394.8 246 74.8
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 2.9e-102 376.7 245 75.5
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.4e-79 300.1 204 70.1
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 6.9e-56 222.6 412 34.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 6.9e-56 222.6 131 76.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.2e-53 213.4 474 31.9
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.2e-39 168.7 134 57.5
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.0e-38 165.6 204 48.0
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.8e-33 147.5 109 63.3
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 8.0e-28 129.4 86 73.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 1.2e-20 105.5 58 79.3
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.7e-20 103.6 143 46.2
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 5.2e-19 100.1 60 75.0
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 1.5e-18 98.6 156 35.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.2e-13 80.5 167 37.1
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 3.5e-07 60.8 55 58.2
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 5.9e-07 60.1 37 75.7
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 1.7e-06 58.5 47 61.7


User provided reference genes

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