Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR109740 Cardamine hirsuta HOM05D008657 ORTHO05D010869 8.8e-200 701.0 691 100.0
AT2G19280 Arabidopsis thaliana HOM05D008657 ORTHO05D010869 1.3e-147 527.7 408 82.6
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 3.2e-133 479.9 410 77.6
Sp3g32660 Schrenkiella parvula HOM05D008657 ORTHO05D010869 1.2e-132 478.0 414 75.8
Carub.0003s3351 Capsella rubella HOM05D008657 ORTHO05D010869 4.6e-132 476.1 360 80.8
BcaB03g16718 Brassica carinata HOM05D008657 ORTHO05D010869 5.6e-122 442.6 415 57.8
C07p02910 Brassica napus HOM05D008657 ORTHO05D010869 1.7e-118 431.0 417 64.3
BolC7t40688H Brassica oleracea HOM05D008657 ORTHO05D010869 3.8e-118 429.9 417 64.0
BcaC06g36560 Brassica carinata HOM05D008657 ORTHO05D010869 1.9e-117 427.6 417 63.8
A07p01450 Brassica napus HOM05D008657 ORTHO05D010869 2.4e-117 427.2 416 64.7
BraA07t27942Z Brassica rapa HOM05D008657 ORTHO05D010869 3.9e-115 419.9 418 64.4
Aa31LG8G16330 Aethionema arabicum HOM05D008657 ORTHO05D010869 1.1e-114 418.3 408 69.9
Thhalv10023028m.g Eutrema salsugineum HOM05D008657 ORTHO05D010869 4.8e-105 386.3 311 65.3
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 7.7e-63 246.1 366 48.1
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.4e-56 223.4 350 47.1
Cpa.g.sc33.145 Carica papaya HOM05D008657 ORTHO05D010869 1.2e-52 212.2 410 47.8
RcHm_v2.0_Chr1g0330001 Rosa chinensis HOM05D008657 ORTHO05D010869 3.6e-52 210.7 323 52.6
COL.COLO4_28899 Corchorus olitorius HOM05D008657 ORTHO05D010869 1.4e-51 208.8 320 53.4
Actinidia03250 Actinidia chinensis HOM05D008657 ORTHO05D010869 1.9e-48 198.4 340 49.7
TAR376G1027 Trochodendron aralioides HOM05D008657 ORTHO05D010869 6.6e-46 189.9 340 50.3
Lj3C333T3 Lonicera japonica HOM05D008657 ORTHO05D010869 3.6e-44 184.1 323 49.5
Prupe.2G051600 Prunus persica HOM05D008657 ORTHO05D010869 1.8e-43 181.8 325 50.5
CANSAT56G3352 Cannabis sativa HOM05D008657 ORTHO05D010869 2.4e-40 171.4 324 48.8
ClCG07G005030 Citrullus lanatus HOM05D008657 ORTHO05D010869 2.4e-40 171.4 365 37.0
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 9.2e-40 169.5 328 37.5
Sed0024339 Sechium edule HOM05D008657 ORTHO05D010869 1.6e-39 168.7 411 31.1
Hund22231 Selenicereus undatus HOM05D008657 ORTHO05D010869 6.0e-39 166.8 332 47.6
CsaV3_5G029290 Cucumis sativus L. HOM05D008657 ORTHO05D010869 1.7e-38 165.2 355 39.7
FAN10G0285 Fragaria x ananassa HOM05D008657 ORTHO05D010869 5.2e-35 153.7 348 44.5
MELO3C011779.2 Cucumis melo HOM05D008657 ORTHO05D010869 2.0e-34 151.8 342 36.5
Gohir.A06G171100 Gossypium hirsutum HOM05D008657 ORTHO05D010869 1.7e-33 148.7 382 40.8
PGR031G0953 Punica granatum HOM05D008657 ORTHO05D010869 4.9e-33 147.1 297 45.5
Gorai.010G208900 Gossypium raimondii HOM05D008657 ORTHO05D010869 8.3e-33 146.4 320 44.7
Thecc.10G128900 Theobroma cacao HOM05D008657 ORTHO05D010869 6.6e-30 136.7 320 45.0
FAN06G4111 Fragaria x ananassa HOM05D008657 ORTHO05D010869 3.6e-28 131.0 182 42.9
FvH4_7g04580 Fragaria vesca HOM05D008657 ORTHO05D010869 3.1e-27 127.9 182 42.3
DCAR_018350 Daucus carota HOM05D008657 ORTHO05D010869 1.7e-22 112.1 169 33.7
FAN03G0499 Fragaria x ananassa HOM05D008657 ORTHO05D010869 2.5e-21 108.2 136 44.9
Lj3A303T33 Lonicera japonica HOM05D008657 ORTHO05D010869 2.1e-20 105.1 225 34.2
Oeu052822.1 Olea europaea HOM05D008657 ORTHO05D010869 4.4e-18 97.4 238 50.0
FAN01G0963 Fragaria x ananassa HOM05D008657 ORTHO05D010869 9.9e-18 96.3 115 48.7
Eucgr.G03180 Eucalyptus grandis HOM05D008657 ORTHO05D010869 3.9e-14 84.3 112 40.2
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 3.4e-10 71.2 215 25.6
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 8.4e-09 66.6 162 29.0
Oeu039576.1 Olea europaea HOM05D007455 ORTHO05D009431 7.1e-08 63.5 207 26.1
SalBow4G0419 Salvia bowleyana HOM05D007455 ORTHO05D009431 2.3e-06 58.5 165 26.7
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 6.7e-06 57.0 218 28.4


User provided reference genes

Program Settings