Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.5e-268 928.3 510 100.0
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 5.6e-228 794.3 502 82.5
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.2e-214 750.0 501 79.0
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 5.7e-212 741.1 470 80.2
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.2e-209 733.4 470 80.6
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 2.2e-192 676.0 429 80.2
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.8e-192 675.2 496 72.0
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 3.8e-192 675.2 472 74.6
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 3.8e-192 675.2 472 74.6
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.8e-192 675.2 496 72.0
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 7.2e-191 671.0 472 74.6
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.2e-183 645.6 532 66.4
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 7.8e-161 571.2 470 70.9
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 5.6e-159 565.1 410 72.9
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 2.4e-138 496.5 437 57.2
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 2.5e-135 486.5 430 56.7
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 1.2e-129 467.6 425 55.1
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 1.2e-129 467.6 441 53.7
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 4.6e-129 465.7 456 51.3
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 6.0e-129 465.3 429 54.5
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 2.0e-124 450.3 418 53.3
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.2e-123 446.8 415 53.5
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 2.9e-123 446.4 420 55.2
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 3.8e-123 446.0 416 54.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.1e-122 444.5 435 52.6
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 2.4e-122 443.4 415 54.2
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 2.4e-122 443.4 415 54.2
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 4.2e-122 442.6 417 55.2
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 7.1e-122 441.8 418 54.8
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.3e-120 437.6 414 53.9
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 2.3e-120 436.8 418 52.6
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.3e-120 436.8 417 52.3
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 6.6e-120 435.3 418 53.1
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 8.7e-120 434.9 416 52.4
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 8.7e-120 434.9 414 51.9
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 2.5e-119 433.3 416 52.2
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.5e-119 433.3 424 52.4
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 9.6e-119 431.4 416 52.6
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 3.6e-118 429.5 424 51.4
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-117 427.9 416 51.9
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 6.9e-117 425.2 416 51.9
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.0e-116 423.7 417 52.5
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 4.5e-116 422.5 440 57.5
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 2.9e-115 419.9 418 51.2
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 1.1e-114 417.9 436 51.6
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 5.4e-114 415.6 426 47.9
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 9.3e-114 414.8 465 48.8
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.1e-111 407.9 465 47.5
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 6.2e-110 402.1 435 50.3
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.5e-108 397.5 439 46.9
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 2.6e-108 396.7 299 71.2
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 3.4e-108 396.4 417 49.6
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 2.9e-107 393.3 433 53.3
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.1e-105 387.1 417 50.4
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 5.1e-104 382.5 419 48.4
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 5.1e-104 382.5 425 47.5
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 6.7e-104 382.1 419 48.4
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 3.3e-103 379.8 415 48.2
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 4.8e-102 375.9 420 49.3
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.1e-101 374.8 416 47.8
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.5e-100 370.9 415 45.8
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 2.2e-99 367.1 431 50.6
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 4.9e-99 365.9 436 45.4
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 2.5e-98 363.6 420 46.0
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 7.1e-98 362.1 416 46.4
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 1.0e-96 358.2 426 45.8
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 3.0e-96 356.7 425 45.9
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.3e-95 353.2 354 49.7
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 7.4e-95 352.1 426 45.8
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 6.9e-93 345.5 417 45.3
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 9.0e-93 345.1 417 51.3
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 8.5e-91 338.6 455 41.5
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.2e-89 334.7 436 42.4
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.7e-89 333.6 423 49.4
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.0e-88 331.6 415 50.6
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 1.8e-88 330.9 419 42.5
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.9e-87 327.4 429 42.9
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 5.7e-87 325.9 416 46.4
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 9.1e-85 318.5 421 46.8
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 4.5e-84 316.2 418 41.6
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 5.9e-84 315.8 358 49.4
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 7.2e-82 308.9 415 47.7
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.6e-81 306.6 217 72.8
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.9e-80 303.1 423 47.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 6.7e-80 302.4 453 45.9
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 8.8e-80 302.0 420 44.0
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 5.7e-79 299.3 453 45.5
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 9.7e-79 298.5 453 45.3
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.1e-77 295.0 416 43.0
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.2e-75 287.3 415 43.4
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 3.2e-74 283.5 425 39.1
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 3.1e-69 266.9 323 44.6
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 5.7e-63 246.1 433 36.7
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 7.0e-61 239.2 433 35.1
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.5e-60 236.9 246 49.2
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.5e-58 231.5 189 58.2
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.8e-54 217.2 185 58.4
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.8e-53 214.5 280 41.8
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 5.5e-50 203.0 405 33.3
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.0e-44 184.5 177 49.7
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.7e-43 181.4 422 30.8
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.5e-28 130.6 171 43.9
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.0e-27 129.0 145 44.8
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.7e-27 128.3 401 31.4
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.3e-26 124.0 189 38.6
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 9.2e-21 105.9 359 22.6
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 6.0e-20 103.2 174 35.6
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 7.8e-20 102.8 225 31.1
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-18 99.0 153 37.3
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 4.0e-16 90.5 122 39.3
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.7e-14 85.1 137 42.3
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.7e-14 85.1 84 48.8
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 2.4e-13 81.3 99 39.4
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.4e-13 81.3 99 39.4
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 7.8e-12 76.3 108 36.1
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.3e-11 74.7 90 41.1
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 3.3e-10 70.9 111 31.5
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 7.3e-10 69.7 92 38.0
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 2.8e-09 67.8 109 36.7
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 8.1e-09 66.2 91 36.3
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.2e-07 62.4 215 25.1
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 2.6e-07 61.2 91 36.3
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 3.4e-07 60.8 218 25.2
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 4.4e-07 60.5 100 34.0
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.4e-07 60.5 91 33.0
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 7.6e-07 59.7 91 34.1
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 9.9e-07 59.3 91 31.9
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 9.9e-07 59.3 93 33.3
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 9.9e-07 59.3 94 31.9
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 9.9e-07 59.3 94 31.9
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 1.3e-06 58.9 91 34.1
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 1.3e-06 58.9 101 30.7
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 1.3e-06 58.9 94 34.0
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 1.3e-06 58.9 94 30.9
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 1.3e-06 58.9 94 33.0
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 1.3e-06 58.9 91 29.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 1.7e-06 58.5 91 35.2
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 1.7e-06 58.5 91 33.0
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.7e-06 58.5 95 33.7
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 1.7e-06 58.5 91 34.1
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 1.7e-06 58.5 91 33.0
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 1.7e-06 58.5 91 33.0
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 2.2e-06 58.2 91 33.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 2.2e-06 58.2 91 34.1
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.2e-06 58.2 91 33.0
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 2.9e-06 57.8 91 31.9
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 2.9e-06 57.8 91 33.0
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-06 57.4 65 43.1
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 3.8e-06 57.4 91 33.0
Lalb_Chr10g0092591 Lupinus albus HOM05D004127 ORTHO05D005119 4.9e-06 57.0 91 34.1
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 4.9e-06 57.0 91 31.9
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 4.9e-06 57.0 91 31.9
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 6.4e-06 56.6 91 31.9
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 6.4e-06 56.6 91 33.0
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.4e-06 56.6 92 34.8
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 6.4e-06 56.6 94 31.9
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 6.4e-06 56.6 94 34.0
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 8.4e-06 56.2 115 29.6
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 8.4e-06 56.2 91 33.0
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 8.4e-06 56.2 215 23.3


User provided reference genes

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