Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 3.0e-152 542.0 308 100.0
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.0e-131 473.8 314 81.5
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.3e-131 473.4 309 81.2
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.7e-131 473.0 315 81.3
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 9.6e-114 414.1 311 75.6
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 4.7e-113 411.8 316 73.1
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 4.7e-113 411.8 316 73.1
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 4.7e-113 411.8 316 73.1
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.1e-112 410.6 311 74.6
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.1e-112 410.6 311 74.6
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 6.9e-112 407.9 309 71.5
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 2.9e-110 402.5 317 72.9
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 3.8e-110 402.1 314 73.2
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 3.8e-110 402.1 314 73.2
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 1.7e-102 376.7 314 69.1
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 1.9e-101 373.2 315 68.3
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 3.3e-98 362.5 314 70.4
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 3.1e-96 355.9 314 68.5
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.4e-93 346.3 311 68.5
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 8.2e-81 304.7 315 58.1
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.5e-71 273.9 309 59.5
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.5e-71 273.9 309 59.5
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 3.8e-70 269.2 326 50.9
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 7.9e-68 261.5 329 49.8
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 1.1e-66 257.7 315 48.6
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.2e-65 253.4 321 45.2
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 2.8e-65 253.1 310 50.3
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 2.8e-65 253.1 319 46.4
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 6.3e-65 251.9 310 50.0
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 5.3e-64 248.8 321 46.7
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.2e-63 247.7 319 47.0
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.2e-63 247.7 312 49.7
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 1.2e-63 247.7 307 48.2
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 1.0e-62 244.6 306 45.8
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 5.0e-62 242.3 315 47.3
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.1e-61 241.1 325 47.7
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.1e-61 241.1 318 46.2
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 1.9e-61 240.4 217 71.0
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.9e-61 240.4 310 45.8
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 3.2e-61 239.6 340 44.4
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.4e-61 238.0 318 45.3
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.6e-60 237.3 307 46.3
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 2.7e-60 236.5 322 45.3
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 4.7e-60 235.7 327 44.6
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 3.9e-59 232.6 317 44.8
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 5.2e-59 232.3 245 55.1
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 8.8e-59 231.5 311 47.3
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.1e-58 231.1 317 45.4
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.5e-58 230.7 316 49.4
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.0e-58 230.3 313 46.6
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 2.0e-58 230.3 315 45.1
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.0e-58 230.3 306 44.1
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 3.3e-58 229.6 318 45.3
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 7.4e-58 228.4 316 46.2
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 7.4e-58 228.4 316 44.6
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 1.3e-57 227.6 323 44.9
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 1.3e-57 227.6 364 40.9
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.7e-57 227.3 316 46.2
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 2.8e-57 226.5 310 44.8
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 3.7e-57 226.1 317 46.1
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 6.3e-57 225.3 316 45.6
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 8.2e-57 224.9 319 43.3
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 8.2e-57 224.9 312 45.5
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 1.1e-56 224.6 316 43.4
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.8e-56 223.8 353 42.5
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 2.4e-56 223.4 307 52.4
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 5.3e-56 222.2 307 43.0
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 5.3e-56 222.2 310 44.2
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 7.0e-56 221.9 350 41.7
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 9.1e-56 221.5 316 45.6
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 4.5e-55 219.2 315 46.0
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 5.9e-55 218.8 307 42.3
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.7e-54 217.2 318 42.1
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 2.2e-54 216.9 310 41.6
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 3.8e-54 216.1 321 43.3
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 3.8e-54 216.1 308 45.5
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 8.5e-54 214.9 315 45.4
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 8.5e-54 214.9 314 42.4
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 8.5e-54 214.9 310 43.2
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 8.5e-54 214.9 312 41.0
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.5e-53 214.2 309 44.0
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 4.2e-53 212.6 322 41.9
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 9.4e-53 211.5 313 43.5
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.2e-52 211.1 306 47.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 1.2e-52 211.1 319 40.8
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.6e-52 210.7 310 42.6
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 6.1e-52 208.8 307 42.3
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 1.4e-51 207.6 329 43.2
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 2.3e-51 206.8 316 41.5
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 1.2e-50 204.5 309 41.1
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 1.5e-50 204.1 219 53.0
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 2.0e-50 203.8 158 75.3
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 2.0e-50 203.8 308 42.9
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 2.0e-50 203.8 312 42.0
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 3.3e-50 203.0 312 40.1
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.4e-50 202.6 306 41.2
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 1.3e-49 201.1 312 42.9
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 1.3e-49 201.1 295 41.7
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.7e-49 200.7 313 40.9
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 3.7e-49 199.5 316 45.3
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.7e-49 199.5 308 44.5
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 4.8e-49 199.1 306 40.8
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 4.8e-49 199.1 218 51.4
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 4.8e-49 199.1 310 41.0
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 6.3e-49 198.7 311 39.9
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 8.3e-49 198.4 310 41.3
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 1.8e-48 197.2 314 40.1
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.8e-48 197.2 242 48.3
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 2.4e-48 196.8 326 39.6
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 2.4e-48 196.8 310 41.0
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.1e-48 196.4 224 48.2
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 5.3e-48 195.7 248 45.2
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 9.1e-48 194.9 212 52.4
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 9.1e-48 194.9 301 42.2
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 9.1e-48 194.9 213 53.5
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 1.2e-47 194.5 313 40.6
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 2.7e-47 193.4 307 40.4
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.7e-47 193.4 314 42.7
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 4.5e-47 192.6 312 40.1
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 2.2e-46 190.3 229 47.6
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 2.2e-46 190.3 316 38.6
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 5.0e-46 189.1 316 40.5
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 6.5e-46 188.7 316 39.9
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.5e-45 187.6 332 38.3
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 1.9e-45 187.2 306 37.3
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 3.6e-44 183.0 309 37.9
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 3.0e-43 179.9 309 38.8
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 2.6e-42 176.8 307 39.1
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 3.7e-41 172.9 193 57.0
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 1.1e-40 171.4 284 41.5
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 4.5e-39 166.0 378 33.9
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 5.5e-37 159.1 337 40.1
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.4e-34 149.8 340 34.1
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.7e-31 140.2 309 33.3
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 3.9e-30 136.3 174 47.1
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.0e-30 136.0 173 49.1
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 4.7e-28 129.4 279 33.3
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 5.8e-26 122.5 365 31.8
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.0e-24 115.5 284 34.9
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-23 114.0 388 29.1
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.5e-21 107.8 335 31.9
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 7.3e-21 105.5 87 72.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.2e-20 104.8 346 28.3
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-19 101.3 373 29.8
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 4.4e-18 96.3 95 55.8
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.6e-15 87.8 378 26.2
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.1e-15 87.4 156 40.4
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 2.3e-14 84.0 126 41.3
BcaB07g31779 Brassica carinata HOM05D001401 ORTHO05D006368 1.5e-13 81.3 72 65.3
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.8e-12 77.0 276 30.8
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 8.1e-12 75.5 188 33.5
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 8.9e-11 72.0 112 34.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.0e-10 70.9 346 24.9
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 5.8e-10 69.3 105 37.1
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 8.3e-09 65.5 145 31.7
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 2.4e-08 63.9 57 61.4
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.2e-08 63.5 55 58.2
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.2e-08 63.5 160 28.8
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.1e-07 60.8 146 28.8
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.0e-06 58.5 100 40.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.3e-06 58.2 107 35.5
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.3e-06 58.2 107 35.5
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.7e-06 57.8 96 38.5
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.3e-06 57.4 107 35.5
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 2.3e-06 57.4 105 35.2
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 2.3e-06 57.4 77 39.0
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 3.0e-06 57.0 85 38.8
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 3.9e-06 56.6 107 35.5
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 5.1e-06 56.2 77 41.6
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 5.1e-06 56.2 72 43.1
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 6.6e-06 55.8 77 41.6
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 8.6e-06 55.5 102 35.3
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 8.6e-06 55.5 99 38.4
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 8.6e-06 55.5 105 36.2


User provided reference genes

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