Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR105280 Cardamine hirsuta HOM05D006483 ORTHO05D007837 6.0e-199 697.2 326 100.0
AL3G45940 Arabidopsis lyrata HOM05D006483 ORTHO05D007837 1.2e-183 646.4 326 92.6
AT2G14260 Arabidopsis thaliana HOM05D006483 ORTHO05D007837 5.6e-181 637.5 319 92.5
Carub.0003s2843 Capsella rubella HOM05D006483 ORTHO05D007837 2.1e-180 635.6 325 90.5
Thhalv10022723m.g Eutrema salsugineum HOM05D006483 ORTHO05D007837 6.2e-180 634.0 327 89.9
Aa31LG8G12670 Aethionema arabicum HOM05D006483 ORTHO05D007837 1.1e-179 633.3 324 90.7
Sp3g27660 Schrenkiella parvula HOM05D006483 ORTHO05D007837 7.6e-178 627.1 327 89.0
BolC3t17891H Brassica oleracea HOM05D006483 ORTHO05D007837 4.2e-176 621.3 317 90.2
BcaC01g03099 Brassica carinata HOM05D006483 ORTHO05D007837 1.2e-175 619.8 317 89.9
A03p45170 Brassica napus HOM05D006483 ORTHO05D007837 1.3e-174 616.3 317 89.3
BraA03t13652Z Brassica rapa HOM05D006483 ORTHO05D007837 1.3e-174 616.3 317 89.3
BcaB08g34553 Brassica carinata HOM05D006483 ORTHO05D007837 2.5e-173 612.1 328 87.5
Sabra16G0180000 Salix brachista HOM05D006483 ORTHO05D007837 2.1e-172 609.0 315 87.6
FAN24G1160 Fragaria x ananassa HOM05D006483 ORTHO05D007837 1.1e-171 606.7 323 84.8
C03p56040 Brassica napus HOM05D006483 ORTHO05D007837 1.8e-171 605.9 346 82.7
FAN15G2441 Fragaria x ananassa HOM05D006483 ORTHO05D007837 1.8e-171 605.9 324 84.9
Duzib132G0719 Durio zibethinus HOM05D006483 ORTHO05D007837 2.4e-171 605.5 325 85.8
FAN20G1555 Fragaria x ananassa HOM05D006483 ORTHO05D007837 4.0e-171 604.7 323 84.8
TWI59G1265 Tripterygium wilfordii HOM05D006483 ORTHO05D007837 5.3e-171 604.4 315 86.7
Atru.chr5.2145 Acer truncatum HOM05D006483 ORTHO05D007837 6.9e-171 604.0 328 84.1
Duzib248G0339 Durio zibethinus HOM05D006483 ORTHO05D007837 6.9e-171 604.0 325 85.5
FvH4_2g02550 Fragaria vesca HOM05D006483 ORTHO05D007837 6.9e-171 604.0 323 84.5
Gohir.D12G041300 Gossypium hirsutum HOM05D006483 ORTHO05D007837 9.0e-171 603.6 314 87.3
CANSAT25G2975 Cannabis sativa HOM05D006483 ORTHO05D007837 1.2e-170 603.2 326 85.3
Gohir.A12G031000 Gossypium hirsutum HOM05D006483 ORTHO05D007837 2.0e-170 602.4 314 87.3
Gorai.008G043200 Gossypium raimondii HOM05D006483 ORTHO05D007837 2.0e-170 602.4 314 87.3
MD10G1115000 Malus domestica HOM05D006483 ORTHO05D007837 2.0e-170 602.4 323 85.8
Thecc.02G034600 Theobroma cacao HOM05D006483 ORTHO05D007837 4.5e-170 601.3 326 85.0
ClCG10G009710 Citrullus lanatus HOM05D006483 ORTHO05D007837 1.0e-169 600.1 318 85.2
CsaV3_4G014600 Cucumis sativus L. HOM05D006483 ORTHO05D007837 1.3e-169 599.7 318 85.2
Lj1g0015418 Lotus japonicus HOM05D006483 ORTHO05D007837 1.3e-169 599.7 315 86.0
Phvul.006G198100 Phaseolus vulgaris HOM05D006483 ORTHO05D007837 1.3e-169 599.7 315 85.1
Prupe.8G157100 Prunus persica HOM05D006483 ORTHO05D007837 1.3e-169 599.7 312 86.9
Cpa.g.sc20.69 Carica papaya HOM05D006483 ORTHO05D007837 1.7e-169 599.4 326 83.7
Manes.07G049300 Manihot esculenta HOM05D006483 ORTHO05D007837 2.2e-169 599.0 326 84.4
GSVIVG01036968001 Vitis vinifera HOM05D006483 ORTHO05D007837 2.9e-169 598.6 326 82.5
Dinv09500 Davidia involucrata HOM05D006483 ORTHO05D007837 3.8e-169 598.2 314 86.3
THA.LOC104819515 Tarenaya hassleriana HOM05D006483 ORTHO05D007837 3.8e-169 598.2 315 86.3
arahy.Tifrunner.gnm1.ann1.SKNB9F Arachis hypogaea HOM05D006483 ORTHO05D007837 4.9e-169 597.8 323 84.5
Potri.001G287700 Populus trichocarpa HOM05D006483 ORTHO05D007837 4.9e-169 597.8 315 86.0
COL.COLO4_17833 Corchorus olitorius HOM05D006483 ORTHO05D007837 6.5e-169 597.4 348 80.7
CiPaw.05G024900 Carya illinoinensis HOM05D006483 ORTHO05D007837 8.4e-169 597.0 323 85.1
VMungo0540G0518 Vigna mungo HOM05D006483 ORTHO05D007837 1.1e-168 596.7 315 84.4
CiPaw.06G161800 Carya illinoinensis HOM05D006483 ORTHO05D007837 1.4e-168 596.3 315 85.7
Ciclev10030436m.g Citrus clementina HOM05D006483 ORTHO05D007837 1.4e-168 596.3 326 83.7
Glyma.15G061600 Glycine max HOM05D006483 ORTHO05D007837 1.9e-168 595.9 315 84.4
RcHm_v2.0_Chr6g0246361 Rosa chinensis HOM05D006483 ORTHO05D007837 5.5e-168 594.3 323 83.6
Cfa004758 Carpinus fangiana HOM05D006483 ORTHO05D007837 9.3e-168 593.6 320 84.1
Sc14g0002760 Simmondsia chinensis HOM05D006483 ORTHO05D007837 1.2e-167 593.2 312 85.3
Sed0015964 Sechium edule HOM05D006483 ORTHO05D007837 1.6e-167 592.8 315 84.4
Psat1g212200 Pisum sativum HOM05D006483 ORTHO05D007837 2.1e-167 592.4 314 84.1
Lalb_Chr15g0090221 Lupinus albus HOM05D006483 ORTHO05D007837 6.0e-167 590.9 315 84.1
ECA234G3552 Erigeron canadensis HOM05D006483 ORTHO05D007837 1.0e-166 590.1 314 84.1
PGR142G2962 Punica granatum HOM05D006483 ORTHO05D007837 1.0e-166 590.1 315 84.1
QL11p027690 Quercus lobata HOM05D006483 ORTHO05D007837 1.0e-166 590.1 315 84.8
Medtr2g010480 Medicago truncatula HOM05D006483 ORTHO05D007837 1.3e-166 589.7 314 84.7
vmacro01915 Vaccinium macrocarpon HOM05D006483 ORTHO05D007837 1.3e-166 589.7 326 83.1
FAN27G0654 Fragaria x ananassa HOM05D006483 ORTHO05D007837 3.0e-166 588.6 346 78.9
Aqoxy6G02925 Aquilegia oxysepala HOM05D006483 ORTHO05D007837 3.9e-166 588.2 313 83.7
Eucgr.I02515 Eucalyptus grandis HOM05D006483 ORTHO05D007837 3.9e-166 588.2 315 84.8
Rhsim11G0146300 Rhododendron simsii HOM05D006483 ORTHO05D007837 3.9e-166 588.2 315 84.1
Ca_00195_v3 Cicer arietinum L. HOM05D006483 ORTHO05D007837 6.7e-166 587.4 315 83.5
Nn6g34537 Nelumbo nucifera HOM05D006483 ORTHO05D007837 8.7e-166 587.0 315 82.5
Cc02_g20380 Coffea canephora HOM05D006483 ORTHO05D007837 4.3e-165 584.7 315 83.2
HanXRQChr10g0297661 Helianthus annuus HOM05D006483 ORTHO05D007837 7.4e-165 583.9 315 83.2
Lsat_1_v5_gn_5_110541 Lactuca sativa HOM05D006483 ORTHO05D007837 7.4e-165 583.9 315 83.2
TAR376G0523 Trochodendron aralioides HOM05D006483 ORTHO05D007837 9.6e-165 583.6 320 81.2
EL10Ac9g22152 Beta vulgaris HOM05D006483 ORTHO05D007837 8.2e-164 580.5 312 83.7
PSO541G5548 Papaver somniferum HOM05D006483 ORTHO05D007837 8.2e-164 580.5 316 81.6
PSO675G7999 Papaver somniferum HOM05D006483 ORTHO05D007837 2.0e-162 575.9 316 81.0
Sopen11g019810 Solanum pennellii HOM05D006483 ORTHO05D007837 3.4e-162 575.1 316 82.6
CAN.G475.27 Capsicum annuum HOM05D006483 ORTHO05D007837 5.9e-162 574.3 312 83.3
Solyc11g044310.2 Solanum lycopersicum HOM05D006483 ORTHO05D007837 1.7e-161 572.8 316 82.3
DCAR_029840 Daucus carota HOM05D006483 ORTHO05D007837 2.5e-160 568.9 316 81.0
Peaxi162Scf00152g00613 Petunia axillaris HOM05D006483 ORTHO05D007837 5.1e-158 561.2 339 76.1
SalBow6G1047 Salvia bowleyana HOM05D006483 ORTHO05D007837 8.7e-158 560.5 323 78.9
CSS0046506 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 1.9e-157 559.3 319 80.9
Migut.B00501 Erythranthe guttata HOM05D006483 ORTHO05D007837 5.7e-157 557.8 315 78.7
Lj5C223T22 Lonicera japonica HOM05D006483 ORTHO05D007837 7.4e-157 557.4 319 80.6
ATR0739G015 Amborella trichopoda HOM05D006483 ORTHO05D007837 6.3e-156 554.3 315 79.0
unitig_21.g20708 Utricularia gibba HOM05D006483 ORTHO05D007837 1.8e-155 552.7 316 79.1
SGA_v2.0_scaffold342G49421 Striga asiatica HOM05D006483 ORTHO05D007837 1.0e-153 547.0 333 75.4
TAR628G0755 Trochodendron aralioides HOM05D006483 ORTHO05D007837 2.5e-152 542.3 286 82.5
MELO3C018038.2 Cucumis melo HOM05D006483 ORTHO05D007837 7.9e-151 537.3 352 73.6
arahy.Tifrunner.gnm1.ann1.AKE21I Arachis hypogaea HOM05D006483 ORTHO05D007837 9.7e-149 530.4 323 76.5
MSTRG.16655 Avicennia marina HOM05D006483 ORTHO05D007837 4.1e-147 525.0 282 82.6
CSS0033600 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 4.1e-147 525.0 319 78.1
HPP92_006303 Vanilla planifolia HOM05D006483 ORTHO05D007837 6.9e-147 524.2 315 76.2
CDE02G1970 Ceratophyllum demersum HOM05D006483 ORTHO05D007837 3.2e-144 515.4 315 74.9
SMO145G0068 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 2.3e-142 509.2 317 70.7
Zm00001eb292750 Zea mays HOM05D006483 ORTHO05D007837 5.2e-142 508.1 287 79.4
Mapoly0001s0344 Marchantia polymorpha HOM05D006483 ORTHO05D007837 1.1e-141 506.9 315 71.4
Pp3c4_27270 Physcomitrium patens HOM05D006483 ORTHO05D007837 9.7e-141 503.8 315 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4362 Anthoceros agrestis HOM05D006483 ORTHO05D007837 1.6e-138 496.5 316 69.0
AUR62027055 Chenopodium quinoa HOM05D006483 ORTHO05D007837 5.9e-138 494.6 312 73.4
Haze_10356 Corylus avellana HOM05D006483 ORTHO05D007837 2.2e-129 466.1 568 46.8
CBR_g8564 Chara braunii HOM05D006483 ORTHO05D007837 1.1e-128 463.8 323 65.3
Os05g0513900 Oryza sativa ssp. japonica HOM05D006483 ORTHO05D007837 6.1e-119 431.4 245 80.0
Ah.01g024350 Amaranthus hybridus HOM05D006483 ORTHO05D007837 1.5e-104 383.6 263 70.7
AUR62030898 Chenopodium quinoa HOM05D006483 ORTHO05D007837 6.8e-102 374.8 278 65.1
Nitab4.5_0007517g0010 Nicotiana tabacum HOM05D006483 ORTHO05D007837 3.2e-99 365.9 189 86.2
Actinidia00335 Actinidia chinensis HOM05D006483 ORTHO05D007837 3.3e-96 355.9 223 75.8
Mapoly0142s0028 Marchantia polymorpha HOM05D006483 ORTHO05D007837 5.2e-94 348.6 351 47.0
SMO364G0301 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 2.2e-84 316.6 310 48.1
AagrBONN_evm.TU.Sc2ySwM_344.1401 Anthoceros agrestis HOM05D006483 ORTHO05D007837 8.4e-84 314.7 348 44.3
SMO353G0285 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 8.4e-84 314.7 311 47.9
MBI16_g27214_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 8.1e-71 271.6 162 77.2
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 6.7e-57 225.3 122 78.7
Zm00001eb142680 Zea mays HOM05D006483 ORTHO05D007837 7.4e-56 221.9 187 56.1
MBI16_g41225_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 2.8e-55 219.9 156 66.7
PRCOL_00002897 Prasinoderma coloniale HOM05D006483 ORTHO05D007837 2.8e-55 219.9 345 39.1
EL10Ac8g19599 Beta vulgaris HOM05D006483 ORTHO05D007837 3.5e-50 203.0 137 70.8
Cre08.g375600 Chlamydomonas reinhardtii HOM05D006483 ORTHO05D007837 6.7e-49 198.7 200 45.0
MD05G1112500 Malus domestica HOM05D006483 ORTHO05D007837 8.7e-49 198.4 204 52.5
Oeu007495.1 Olea europaea HOM05D006483 ORTHO05D007837 1.0e-28 131.7 82 69.5
MD05G1112400 Malus domestica HOM05D006483 ORTHO05D007837 3.8e-20 103.2 65 67.7
SEGI_05070 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 3.1e-14 83.6 79 50.6
arahy.Tifrunner.gnm1.ann1.W5BQ9H Arachis hypogaea HOM05D006483 ORTHO05D000252 6.5e-12 75.9 62 59.7
TPR.G27616 Trifolium pratense HOM05D006483 ORTHO05D007837 1.9e-11 74.3 39 74.4
Cfa023956 Carpinus fangiana HOM05D026080 ORTHO05D034125 6.8e-09 65.9 112 34.8
Ciclev10016000m.g Citrus clementina HOM05D000363 ORTHO05D000236 4.8e-07 59.7 155 26.5
Migut.M01182 Erythranthe guttata HOM05D000363 ORTHO05D000236 6.3e-07 59.3 146 30.1
SEGI_04316 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 6.3e-07 59.3 34 70.6
VMungo0251G1525 Vigna mungo HOM05D000363 ORTHO05D000236 8.3e-07 58.9 121 28.9
FAN16G1656 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.1e-06 58.5 141 29.1
PSO339G5342 Papaver somniferum HOM05D000363 ORTHO05D000236 1.8e-06 57.8 101 32.7
RcHm_v2.0_Chr5g0007821 Rosa chinensis HOM05D000363 ORTHO05D000236 1.8e-06 57.8 100 31.0
FAN21G0435 Fragaria x ananassa HOM05D000363 ORTHO05D000236 4.1e-06 56.6 124 31.5
RcHm_v2.0_Chr5g0007841 Rosa chinensis HOM05D000363 ORTHO05D000236 5.4e-06 56.2 122 30.3
Zm00001eb049690 Zea mays HOM05D003600 ORTHO05D004129 5.4e-06 56.2 36 58.3
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 7.0e-06 55.8 120 32.5
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 9.1e-06 55.5 254 26.8


User provided reference genes

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