Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR104890 Cardamine hirsuta HOM05D005191 ORTHO05D006725 2.2e-282 974.9 486 100.0
AL3G44790 Arabidopsis lyrata HOM05D005191 ORTHO05D006725 2.0e-243 845.5 488 87.1
AT2G11000 Arabidopsis thaliana HOM05D005191 ORTHO05D006725 1.6e-240 835.9 491 86.2
BcaC01g02222 Brassica carinata HOM05D005191 ORTHO05D006725 1.0e-239 833.2 481 86.1
C03p67700 Brassica napus HOM05D005191 ORTHO05D006725 1.0e-239 833.2 481 86.1
Carub.0003s2755 Capsella rubella HOM05D005191 ORTHO05D006725 5.2e-239 830.9 488 86.5
A06p26710 Brassica napus HOM05D005191 ORTHO05D006725 6.8e-239 830.5 481 85.7
Sp3g26260 Schrenkiella parvula HOM05D005191 ORTHO05D006725 8.8e-239 830.1 486 85.2
BcaB02g10775 Brassica carinata HOM05D005191 ORTHO05D006725 3.4e-238 828.2 481 85.7
BolSC21t60229H Brassica oleracea HOM05D005191 ORTHO05D006725 1.3e-237 826.2 488 84.8
BraA06t25606Z Brassica rapa HOM05D005191 ORTHO05D006725 3.2e-220 768.5 496 79.2
Aa31LG8G12200 Aethionema arabicum HOM05D005191 ORTHO05D006725 5.6e-217 757.7 485 79.0
THA.LOC104826555 Tarenaya hassleriana HOM05D005191 ORTHO05D006725 1.5e-206 723.0 477 75.3
Atru.chr7.1956 Acer truncatum HOM05D005191 ORTHO05D006725 4.4e-190 668.3 464 70.3
Thecc.09G133700 Theobroma cacao HOM05D005191 ORTHO05D006725 6.6e-186 654.4 466 69.1
QL02p090053 Quercus lobata HOM05D005191 ORTHO05D006725 1.1e-185 653.7 455 70.8
CiPaw.03G249200 Carya illinoinensis HOM05D005191 ORTHO05D006725 8.1e-184 647.5 448 70.8
Gohir.D08G100100 Gossypium hirsutum HOM05D005191 ORTHO05D006725 1.4e-183 646.7 464 68.3
Gorai.004G107900 Gossypium raimondii HOM05D005191 ORTHO05D006725 1.8e-183 646.4 464 68.3
Ciclev10007583m.g Citrus clementina HOM05D005191 ORTHO05D006725 2.4e-183 646.0 465 68.2
Gohir.A08G088900 Gossypium hirsutum HOM05D005191 ORTHO05D006725 3.4e-182 642.1 464 68.1
Cfa002299 Carpinus fangiana HOM05D005191 ORTHO05D006725 8.4e-181 637.5 455 70.1
Prupe.7G249300 Prunus persica HOM05D005191 ORTHO05D006725 8.4e-181 637.5 452 69.7
Dinv41468 Davidia involucrata HOM05D005191 ORTHO05D006725 1.2e-179 633.6 456 69.1
Thhalv10022576m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 6.7e-178 627.9 365 85.5
Glyma.13G160800 Glycine max HOM05D005191 ORTHO05D006725 1.1e-177 627.1 472 66.7
Glyma.17G110600 Glycine max HOM05D005191 ORTHO05D006725 1.1e-177 627.1 470 66.6
RcHm_v2.0_Chr2g0087561 Rosa chinensis HOM05D005191 ORTHO05D006725 2.5e-177 625.9 452 68.4
Eucgr.E03534 Eucalyptus grandis HOM05D005191 ORTHO05D006725 4.3e-177 625.2 460 66.3
MD02G1022800 Malus domestica HOM05D005191 ORTHO05D006725 7.4e-177 624.4 447 68.9
FvH4_1g02530 Fragaria vesca HOM05D005191 ORTHO05D006725 9.6e-177 624.0 470 66.2
FAN19G1407 Fragaria x ananassa HOM05D005191 ORTHO05D006725 9.6e-177 624.0 470 66.2
Lalb_Chr12g0198261 Lupinus albus HOM05D005191 ORTHO05D006725 1.6e-176 623.2 470 64.9
Potri.006G065000 Populus trichocarpa HOM05D005191 ORTHO05D006725 1.6e-176 623.2 476 64.9
CANSAT11G2540 Cannabis sativa HOM05D005191 ORTHO05D006725 2.8e-176 622.5 461 65.3
COL.COLO4_15579 Corchorus olitorius HOM05D005191 ORTHO05D006725 2.8e-176 622.5 466 67.6
FAN28G1162 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.6e-176 622.1 470 66.0
TWI63G0111 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 4.8e-176 621.7 465 65.8
FAN23G0864 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.8e-175 619.8 470 66.0
FAN26G1428 Fragaria x ananassa HOM05D005191 ORTHO05D006725 3.1e-175 619.0 470 65.5
TAR625G1134 Trochodendron aralioides HOM05D005191 ORTHO05D006725 9.0e-175 617.5 452 67.9
Aqoxy7G02403 Aquilegia oxysepala HOM05D005191 ORTHO05D006725 5.8e-174 614.8 447 67.8
MD15G1165500 Malus domestica HOM05D005191 ORTHO05D006725 9.9e-174 614.0 460 67.6
VMungo1215G2132 Vigna mungo HOM05D005191 ORTHO05D006725 1.3e-173 613.6 470 64.9
Nn2g12129 Nelumbo nucifera HOM05D005191 ORTHO05D006725 6.4e-173 611.3 456 66.7
TWI32G0152 Tripterygium wilfordii HOM05D005191 ORTHO05D006725 8.4e-173 610.9 451 66.3
Cpa.g.sc46.51 Carica papaya HOM05D005191 ORTHO05D006725 1.1e-172 610.5 428 70.1
Medtr4g115450 Medicago truncatula HOM05D005191 ORTHO05D006725 1.9e-172 609.8 447 66.7
Phvul.003G169500 Phaseolus vulgaris HOM05D005191 ORTHO05D006725 2.4e-172 609.4 453 66.7
Cc06_g08000 Coffea canephora HOM05D005191 ORTHO05D006725 4.2e-172 608.6 456 65.8
Cc06_g08010 Coffea canephora HOM05D005191 ORTHO05D006725 4.2e-172 608.6 456 65.8
CSS0021683 Camellia sinensis var. sinensis HOM05D005191 ORTHO05D006725 1.6e-171 606.7 475 65.1
Sed0022210 Sechium edule HOM05D005191 ORTHO05D006725 2.1e-171 606.3 463 65.9
Potri.018G125171 Populus trichocarpa HOM05D005191 ORTHO05D006725 7.9e-171 604.4 472 63.6
Potri.T124807 Populus trichocarpa HOM05D005191 ORTHO05D006725 2.3e-170 602.8 472 63.3
CsaV3_1G027890 Cucumis sativus L. HOM05D005191 ORTHO05D006725 3.0e-170 602.4 465 65.4
Solyc07g007810.3 Solanum lycopersicum HOM05D005191 ORTHO05D006725 3.0e-170 602.4 468 64.1
Sopen07g001100 Solanum pennellii HOM05D005191 ORTHO05D006725 3.9e-170 602.1 468 64.1
arahy.Tifrunner.gnm1.ann1.0L2UMW Arachis hypogaea HOM05D005191 ORTHO05D006725 6.7e-170 601.3 455 64.4
arahy.Tifrunner.gnm1.ann1.W0WM15 Arachis hypogaea HOM05D005191 ORTHO05D006725 6.7e-170 601.3 455 64.4
Rhsim03G0251800 Rhododendron simsii HOM05D005191 ORTHO05D006725 4.3e-169 598.6 429 68.8
PSO170G6846 Papaver somniferum HOM05D005191 ORTHO05D006725 9.6e-169 597.4 441 67.1
PSO017G2350 Papaver somniferum HOM05D005191 ORTHO05D006725 3.7e-168 595.5 441 66.9
Psat4g036440 Pisum sativum HOM05D005191 ORTHO05D006725 4.8e-168 595.1 467 63.0
Migut.K00420 Erythranthe guttata HOM05D005191 ORTHO05D006725 6.2e-168 594.7 456 63.8
Peaxi162Scf00088g01225 Petunia axillaris HOM05D005191 ORTHO05D006725 6.2e-168 594.7 468 63.5
Lsat_1_v5_gn_8_61061 Lactuca sativa HOM05D005191 ORTHO05D006725 8.1e-168 594.3 486 61.1
CAN.G1663.1 Capsicum annuum HOM05D005191 ORTHO05D006725 1.1e-167 594.0 466 63.7
Lj7A435G51 Lonicera japonica HOM05D005191 ORTHO05D006725 3.1e-167 592.4 435 66.9
Sabra18G0106500 Salix brachista HOM05D005191 ORTHO05D006725 3.1e-167 592.4 494 61.1
Lj4g0015768 Lotus japonicus HOM05D005191 ORTHO05D006725 5.3e-167 591.7 467 62.1
Sc18g0000280 Simmondsia chinensis HOM05D005191 ORTHO05D006725 2.9e-165 585.9 456 62.5
MSTRG.26350 Avicennia marina HOM05D005191 ORTHO05D006725 6.5e-165 584.7 452 64.2
ECA236G3625 Erigeron canadensis HOM05D005191 ORTHO05D006725 8.4e-165 584.3 452 63.1
SGA_v2.0_scaffold63G21813 Striga asiatica HOM05D005191 ORTHO05D006725 5.5e-164 581.6 452 63.1
HPP92_010843 Vanilla planifolia HOM05D005191 ORTHO05D006725 4.6e-163 578.6 448 63.8
vmacro06157 Vaccinium macrocarpon HOM05D005191 ORTHO05D006725 2.5e-161 572.8 441 65.1
Nitab4.5_0000374g0090 Nicotiana tabacum HOM05D005191 ORTHO05D006725 7.4e-161 571.2 431 65.7
ClCG06G011590 Citrullus lanatus HOM05D005191 ORTHO05D006725 2.8e-160 569.3 505 58.6
Manes.06G046300 Manihot esculenta HOM05D005191 ORTHO05D006725 2.8e-160 569.3 438 64.6
HanXRQChr05g0143851 Helianthus annuus HOM05D005191 ORTHO05D006725 1.4e-159 567.0 456 61.6
TPR.G7618 Trifolium pratense HOM05D005191 ORTHO05D006725 1.2e-158 563.9 428 64.3
Hund26552 Selenicereus undatus HOM05D005191 ORTHO05D006725 5.5e-156 555.1 448 62.1
AUR62013300 Chenopodium quinoa HOM05D005191 ORTHO05D006725 2.7e-155 552.7 457 60.6
Ah.14g079340 Amaranthus hybridus HOM05D005191 ORTHO05D006725 4.1e-151 538.9 452 57.5
PGR142G3543 Punica granatum HOM05D005191 ORTHO05D006725 4.1e-151 538.9 449 60.4
EL10Ac8g18733 Beta vulgaris HOM05D005191 ORTHO05D006725 5.0e-149 531.9 530 53.2
Duzib150G0407 Durio zibethinus HOM05D005191 ORTHO05D006725 7.2e-148 528.1 473 58.8
Ca_21665_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 3.0e-146 522.7 407 63.6
Haze_25489 Corylus avellana HOM05D005191 ORTHO05D006725 5.7e-145 518.5 436 63.1
AUR62011184 Chenopodium quinoa HOM05D005191 ORTHO05D006725 1.0e-141 507.7 423 61.0
SEGI_14008 Sequoiadendron giganteum HOM05D005191 ORTHO05D006725 3.8e-141 505.8 472 53.8
Zm00001eb192130 Zea mays HOM05D005191 ORTHO05D006725 1.5e-137 493.8 430 59.3
ATR0800G098 Amborella trichopoda HOM05D005191 ORTHO05D006725 2.6e-134 483.0 401 61.3
Nitab4.5_0005159g0010 Nicotiana tabacum HOM05D005191 ORTHO05D006725 3.1e-127 459.5 357 63.6
DCAR_009327 Daucus carota HOM05D005191 ORTHO05D006725 4.1e-127 459.1 457 53.4
unitig_0.g2715 Utricularia gibba HOM05D005191 ORTHO05D006725 5.3e-127 458.8 404 60.1
Actinidia26371 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.7e-123 445.7 455 53.4
Pp3c26_8550 Physcomitrium patens HOM05D005191 ORTHO05D006725 2.0e-118 430.3 446 48.4
MELO3C010304.2 Cucumis melo HOM05D005191 ORTHO05D006725 7.7e-118 428.3 439 53.8
Mapoly0005s0239 Marchantia polymorpha HOM05D005191 ORTHO05D006725 5.5e-116 422.2 448 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2372 Anthoceros agrestis HOM05D005191 ORTHO05D006725 6.1e-107 392.1 405 48.9
Os02g0803250 Oryza sativa ssp. japonica HOM05D005191 ORTHO05D006725 4.0e-106 389.4 415 51.1
Actinidia38723 Actinidia chinensis HOM05D005191 ORTHO05D006725 4.1e-103 379.4 293 66.2
CDE05G1862 Ceratophyllum demersum HOM05D005191 ORTHO05D006725 5.6e-100 369.0 369 52.6
SMO174G0034 Selaginella moellendorffii HOM05D005191 ORTHO05D006725 1.5e-92 344.4 457 43.1
SalBow1G1849 Salvia bowleyana HOM05D005191 ORTHO05D006725 1.3e-88 331.3 363 47.1
CBR_g29413 Chara braunii HOM05D005191 ORTHO05D006725 6.6e-85 318.9 463 40.6
GSVIVG01002648001 Vitis vinifera HOM05D005191 ORTHO05D006725 3.6e-75 286.6 184 75.5
GSVIVG01015604001 Vitis vinifera HOM05D005191 ORTHO05D006725 6.2e-75 285.8 214 65.0
Psat6g224720 Pisum sativum HOM05D005191 ORTHO05D006725 5.4e-71 272.7 210 65.7
Oeu052176.1 Olea europaea HOM05D005191 ORTHO05D006725 3.2e-63 246.9 217 57.1
Hund26401 Selenicereus undatus HOM05D005191 ORTHO05D006725 1.0e-61 241.9 218 56.4
TPR.G8947 Trifolium pratense HOM05D005191 ORTHO05D006725 4.6e-38 163.3 111 72.1
Nitab4.5_0005159g0020 Nicotiana tabacum HOM05D005191 ORTHO05D006725 1.2e-33 148.7 97 73.2
Rhsim13G0106800 Rhododendron simsii HOM05D005191 ORTHO05D006725 7.7e-33 146.0 141 59.6
PRCOL_00001705 Prasinoderma coloniale HOM05D005191 ORTHO05D006725 6.3e-27 126.3 339 29.5
FAN06G0842 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.1e-23 115.5 111 51.4
Cre06.g300650 Chlamydomonas reinhardtii HOM05D005191 ORTHO05D006725 4.2e-23 113.6 384 26.6
FvH4_7g23890 Fragaria vesca HOM05D005191 ORTHO05D006725 2.1e-22 111.3 95 54.7
Haze_25491 Corylus avellana HOM05D005191 ORTHO05D006725 3.0e-21 107.5 82 63.4
FAN26G2291 Fragaria x ananassa HOM05D005191 ORTHO05D006725 1.3e-19 102.1 98 56.1
FAN10G2766 Fragaria x ananassa HOM05D005191 ORTHO05D006725 2.8e-19 100.9 82 62.2
RcHm_v2.0_Chr5g0051701 Rosa chinensis HOM05D005191 ORTHO05D006725 3.1e-18 97.4 124 45.2
Sp3g26280 Schrenkiella parvula HOM05D005191 ORTHO05D012938 7.0e-18 96.3 67 73.1
MBI13_g29624_MAGBIO Magnolia biondii HOM05D005191 ORTHO05D006725 1.6e-17 95.1 64 65.6
Thhalv10022959m.g Eutrema salsugineum HOM05D005191 ORTHO05D006725 1.3e-16 92.0 110 50.0
Rhsim05G0138400 Rhododendron simsii HOM05D005191 ORTHO05D006725 2.9e-16 90.9 115 53.9
FAN06G5005 Fragaria x ananassa HOM05D005191 ORTHO05D006725 4.7e-14 83.6 113 40.7
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 6.7e-13 79.7 75 53.3
GSVIVG01012804001 Vitis vinifera HOM05D005191 ORTHO05D006725 5.7e-12 76.6 53 69.8
FvH4_1g29180 Fragaria vesca HOM05D005191 ORTHO05D025363 7.5e-12 76.3 51 66.7
Rhsim10G0150400 Rhododendron simsii HOM05D005191 ORTHO05D030537 1.1e-10 72.4 51 70.6
Ca_06948_v3 Cicer arietinum L. HOM05D005191 ORTHO05D006725 1.4e-10 72.0 66 50.0
COL.COLO4_23752 Corchorus olitorius HOM05D005191 ORTHO05D016248 1.8e-10 71.6 61 62.3
COL.COLO4_21409 Corchorus olitorius HOM05D005191 ORTHO05D016248 2.7e-09 67.8 56 64.3
Sabra06G0047500 Salix brachista HOM05D005191 ORTHO05D006725 3.6e-06 57.4 38 65.8


User provided reference genes

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