Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 8.0e-94 347.1 172 100.0
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.8e-57 224.2 195 66.2
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 5.8e-52 208.0 198 60.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 9.9e-44 180.6 220 52.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 9.3e-42 174.1 210 51.4
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 9.3e-42 174.1 210 51.4
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 8.4e-35 151.0 226 44.2
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 1.1e-34 150.6 210 49.5
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.5e-34 149.4 214 49.1
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 4.2e-34 148.7 210 47.1
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 4.2e-34 148.7 210 47.1
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 4.2e-34 148.7 210 47.1
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 2.7e-33 146.0 218 45.9
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.5e-33 145.6 227 44.9
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.6e-33 145.2 231 44.2
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 2.3e-32 142.9 220 45.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.0e-32 142.5 222 45.0
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.0e-32 142.5 230 44.8
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 3.3e-31 139.0 221 42.1
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 6.7e-24 114.8 237 39.2
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 6.7e-24 114.8 241 38.2
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 8.7e-24 114.4 198 41.4
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.5e-23 113.6 229 36.7
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.2e-22 109.8 235 36.6
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-21 107.5 216 36.6
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.1e-21 107.5 238 36.6
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.1e-21 105.5 200 40.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 5.3e-21 105.1 200 40.5
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 5.3e-21 105.1 226 36.7
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 6.9e-21 104.8 204 39.7
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 9.1e-21 104.4 200 40.5
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.2e-20 104.0 218 35.8
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 2.6e-20 102.8 203 40.4
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.5e-20 102.1 218 35.3
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 4.5e-20 102.1 214 36.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.5e-20 102.1 223 36.3
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 7.7e-20 101.3 248 33.1
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.7e-19 100.1 244 34.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 2.2e-19 99.8 223 37.7
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 3.8e-19 99.0 249 33.7
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 6.5e-19 98.2 246 33.3
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 6.5e-19 98.2 248 31.9
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 6.5e-19 98.2 226 36.3
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 1.9e-18 96.7 246 33.7
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 7.2e-18 94.7 236 35.6
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.7e-17 92.8 241 34.4
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.6e-17 92.4 230 33.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 6.1e-17 91.7 239 32.6
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 6.1e-17 91.7 231 35.9
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.0e-16 90.9 225 32.4
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 1.0e-16 90.9 249 33.3
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.0e-16 90.9 198 33.8
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.8e-16 90.1 236 33.9
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.8e-16 90.1 206 35.0
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.3e-16 89.7 231 32.9
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.9e-16 89.0 223 34.1
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 5.1e-16 88.6 239 31.8
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 6.7e-16 88.2 231 36.4
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.1e-15 87.4 239 31.8
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.5e-15 87.0 237 33.8
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.0e-15 86.7 223 35.9
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 3.3e-15 85.9 238 31.5
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 4.4e-15 85.5 243 31.3
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 5.7e-15 85.1 237 29.5
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.4e-15 84.7 249 33.7
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 9.7e-15 84.3 240 30.4
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.3e-14 84.0 230 30.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.7e-14 83.6 224 32.1
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.8e-14 82.8 248 34.3
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.8e-14 82.8 237 30.8
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.8e-14 82.8 242 30.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.7e-14 82.4 217 31.8
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 6.3e-14 81.6 234 32.1
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.1e-13 80.9 242 31.8
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.4e-13 80.5 236 31.4
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 6.9e-13 78.2 235 31.5
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.2e-12 77.4 114 43.0
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.0e-12 76.6 218 29.8
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 2.0e-12 76.6 161 37.3
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.6e-12 76.3 263 28.1
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 5.9e-12 75.1 220 33.2
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 5.9e-12 75.1 221 31.7
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 7.7e-12 74.7 203 35.0
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.2e-11 73.2 125 39.2
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.2e-11 73.2 206 35.0
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.9e-11 72.8 230 33.5
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 2.9e-11 72.8 104 42.3
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.9e-11 72.8 132 36.4
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.8e-11 72.4 240 31.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 5.0e-11 72.0 237 30.8
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.5e-11 71.6 243 30.5
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 8.5e-11 71.2 231 30.3
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.4e-10 70.5 135 39.3
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.9e-10 70.1 132 37.9
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.9e-10 70.1 137 36.5
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.5e-10 69.7 135 39.3
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 4.2e-10 68.9 198 31.3
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 7.2e-10 68.2 113 39.8
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 7.2e-10 68.2 198 31.3
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 1.2e-09 67.4 249 28.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 2.1e-09 66.6 139 34.5
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 2.7e-09 66.2 242 28.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.6e-09 65.9 218 29.8
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 3.6e-09 65.9 80 48.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 3.6e-09 65.9 150 32.0
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 6.1e-09 65.1 150 32.0
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.0e-09 64.7 236 30.1
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 8.0e-09 64.7 139 33.8
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 8.0e-09 64.7 202 32.2
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.8e-08 63.5 105 39.0
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.3e-08 63.2 123 36.6
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 3.0e-08 62.8 153 32.0
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.0e-08 62.8 123 39.0
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.1e-07 60.8 89 43.8
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.1e-07 60.8 58 50.0
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.3e-06 57.4 115 37.4
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 2.2e-06 56.6 136 33.1
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 2.8e-06 56.2 247 29.1


User provided reference genes

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