Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.8e-107 392.5 187 100.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 3.9e-102 374.8 189 94.7
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 5.1e-102 374.4 190 94.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 6.7e-102 374.0 189 93.1
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 6.7e-102 374.0 189 93.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-101 372.9 190 94.2
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 3.3e-101 371.7 189 92.6
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.3e-101 371.3 182 96.2
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 5.6e-101 370.9 190 93.7
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-100 369.8 182 95.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-100 369.8 182 95.6
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.3e-100 369.8 189 92.6
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.9e-97 358.6 188 88.8
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.5e-88 328.9 182 80.8
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 7.9e-87 323.9 178 80.3
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.8e-86 322.8 181 79.6
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 3.0e-86 322.0 182 79.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 6.7e-86 320.9 181 79.0
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.1e-85 320.1 185 78.4
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 4.3e-85 318.2 201 73.6
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 5.7e-85 317.8 177 79.1
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 1.3e-84 316.6 184 77.2
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.3e-84 316.6 188 77.7
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 2.2e-84 315.8 185 75.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.2e-84 315.8 178 80.3
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.3e-84 314.3 181 76.2
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.2e-84 313.9 181 76.2
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-83 313.5 184 75.5
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.8e-83 312.8 177 76.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-83 312.0 179 76.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 3.1e-83 312.0 184 76.6
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 4.1e-83 311.6 176 76.7
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 4.1e-83 311.6 176 76.7
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 4.1e-83 311.6 176 76.7
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 4.1e-83 311.6 178 78.1
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-83 311.2 181 75.7
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.9e-83 310.8 177 79.1
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.9e-83 310.8 177 79.1
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.9e-83 310.8 179 76.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 9.0e-83 310.5 178 79.8
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.2e-82 310.1 178 79.2
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 3.4e-82 308.5 179 78.2
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 4.5e-82 308.1 178 76.4
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 4.5e-82 308.1 178 75.3
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.3e-81 306.6 181 74.6
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-81 306.2 178 78.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-81 306.2 178 78.7
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.2e-81 305.8 178 77.5
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.2e-81 305.8 184 75.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 2.2e-81 305.8 179 75.4
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.9e-81 305.4 178 76.4
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.9e-81 305.4 178 76.4
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.8e-81 305.1 178 75.3
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.8e-81 305.1 178 75.3
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.8e-81 305.1 177 74.6
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 5.0e-81 304.7 178 75.8
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 5.0e-81 304.7 177 76.8
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 5.0e-81 304.7 177 75.1
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 6.5e-81 304.3 178 76.4
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.5e-81 304.3 181 74.0
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.1e-80 303.5 175 77.7
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.9e-80 302.8 178 75.8
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 4.2e-80 301.6 178 72.5
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 9.4e-80 300.4 178 74.2
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 9.4e-80 300.4 178 75.8
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.6e-79 299.7 181 74.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.6e-79 299.7 176 72.7
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.1e-79 299.3 177 75.1
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.1e-79 299.3 178 74.7
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 2.7e-79 298.9 178 74.7
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.6e-79 298.5 178 76.4
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.6e-79 298.5 178 76.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 6.1e-79 297.7 178 73.6
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 7.9e-79 297.4 179 73.2
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.0e-78 297.0 200 69.5
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.4e-78 296.6 199 70.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.8e-78 296.2 179 74.3
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 1.8e-78 296.2 179 72.1
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 2.3e-78 295.8 178 71.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.0e-78 295.4 177 75.7
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.9e-78 295.0 177 70.6
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 5.1e-78 294.7 175 74.3
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 7.4e-77 290.8 169 75.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 9.7e-77 290.4 195 69.2
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 8.2e-76 287.3 178 70.2
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.4e-75 286.6 184 67.4
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.4e-75 286.6 177 70.6
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.3e-75 284.6 164 76.2
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.1e-75 283.9 220 63.2
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.2e-74 283.5 220 62.7
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-73 280.0 177 70.1
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-73 280.0 177 70.1
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.7e-73 279.6 211 61.6
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.0e-73 278.1 161 76.4
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 7.2e-72 274.2 177 68.4
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 7.2e-72 274.2 158 78.5
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.2e-72 274.2 190 67.9
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.6e-71 271.9 182 67.6
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 3.9e-70 268.5 164 74.4
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.6e-69 265.8 178 66.9
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.6e-69 265.8 178 66.9
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 9.7e-69 263.8 178 66.3
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 8.2e-68 260.8 178 68.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.1e-67 260.4 147 79.6
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.4e-67 260.0 147 77.6
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 9.1e-67 257.3 147 77.6
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.2e-66 256.9 187 65.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.5e-66 256.5 178 69.1
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 1.0e-65 253.8 147 74.1
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 3.8e-65 251.9 177 61.0
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 5.0e-65 251.5 144 76.4
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 5.0e-65 251.5 147 75.5
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 8.5e-65 250.8 200 59.0
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.2e-64 248.8 164 69.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.0e-62 242.3 268 48.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.1e-61 240.4 148 70.3
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.5e-61 237.7 144 74.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 2.2e-60 236.1 141 73.8
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 5.9e-58 228.0 170 63.5
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-54 215.3 120 76.7
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 5.7e-53 211.5 164 58.5
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.3e-52 208.0 179 57.0
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 6.3e-52 208.0 142 61.3
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 7.0e-51 204.5 187 57.8
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 3.5e-50 202.2 174 50.0
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.3e-44 183.7 199 47.7
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-42 176.4 173 43.4
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 2.0e-42 176.4 173 43.4
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 6.6e-41 171.4 190 44.7
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.6e-40 168.3 91 80.2
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 1.2e-39 167.2 121 58.7
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.1e-39 166.4 175 52.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-39 165.2 90 77.8
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-38 163.3 143 53.8
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.0e-38 162.2 170 43.5
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.7e-36 156.8 162 46.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 6.4e-36 154.8 204 37.7
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.1e-35 154.1 180 39.4
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.0e-33 146.0 149 49.7
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 5.0e-33 145.2 166 41.0
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.1e-31 139.8 92 63.0
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.0e-26 123.2 87 65.5
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.2e-10 70.9 48 75.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.0e-09 66.2 39 69.2


User provided reference genes

Program Settings