Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 3.5e-159 565.1 321 100.0
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 3.8e-137 491.9 302 95.4
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 9.3e-136 487.3 303 94.7
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.1e-135 486.1 301 93.4
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 5.6e-133 478.0 296 94.9
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 3.6e-132 475.3 296 85.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 3.4e-130 468.8 301 83.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 7.6e-130 467.6 301 84.4
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 9.3e-128 460.7 285 86.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 9.3e-128 460.7 285 86.3
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 7.9e-127 457.6 291 84.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.3e-126 456.1 301 82.4
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.9e-125 453.0 292 82.2
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.7e-113 413.3 300 75.3
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 9.3e-112 407.5 302 73.5
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.7e-110 401.4 302 73.2
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 1.5e-109 400.2 300 72.0
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 1.5e-109 400.2 302 80.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 3.3e-109 399.1 302 78.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 7.4e-109 397.9 301 72.8
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 7.4e-109 397.9 308 78.6
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 1.3e-108 397.1 313 76.7
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.8e-108 396.0 294 75.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 6.3e-108 394.8 301 72.1
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 1.4e-107 393.7 314 74.8
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.4e-107 392.9 298 72.5
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 6.9e-107 391.3 301 78.7
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.2e-106 390.6 301 71.1
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.5e-106 390.2 302 77.5
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 1.5e-106 390.2 302 69.2
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.5e-106 390.2 302 71.9
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 1.5e-106 390.2 301 78.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.4e-106 389.0 301 70.8
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 3.4e-106 389.0 293 72.4
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.5e-106 388.7 320 73.8
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.0e-105 387.5 315 69.5
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 5.0e-105 385.2 301 71.4
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 5.0e-105 385.2 304 74.3
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 5.0e-105 385.2 300 76.0
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 8.5e-105 384.4 302 76.5
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 7.2e-104 381.3 303 69.3
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 4.6e-103 378.6 309 69.3
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 6.1e-103 378.3 303 67.3
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 6.1e-103 378.3 287 72.1
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.0e-102 377.5 301 77.4
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.0e-102 377.5 302 74.5
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.4e-102 377.1 312 67.9
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 2.3e-102 376.3 302 74.8
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.9e-102 375.6 302 73.8
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.1e-101 374.0 314 70.1
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.0e-101 373.2 313 73.8
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 3.3e-101 372.5 297 74.1
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 4.3e-101 372.1 290 75.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 9.7e-101 370.9 291 76.6
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.2e-100 369.8 301 72.8
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 4.8e-100 368.6 288 77.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 8.2e-100 367.9 301 66.8
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.1e-99 367.5 309 66.0
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.4e-99 367.1 301 67.8
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.8e-99 366.7 292 69.2
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.8e-99 366.7 299 69.2
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 2.4e-99 366.3 301 67.4
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 4.1e-99 365.5 301 73.1
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 9.1e-99 364.4 294 70.4
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 2.0e-98 363.2 295 67.8
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 2.6e-98 362.8 380 57.1
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.0e-97 360.9 283 78.4
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.0e-97 360.9 316 64.6
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.0e-97 360.9 297 66.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 1.7e-97 360.1 276 72.5
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.7e-97 360.1 292 66.8
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 3.8e-97 359.0 274 76.3
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 6.5e-97 358.2 289 68.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 8.5e-97 357.8 305 63.9
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.1e-96 357.5 293 66.6
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.4e-96 357.1 289 68.9
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.9e-96 356.7 292 67.8
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 2.5e-96 356.3 302 72.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.2e-96 355.9 295 67.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 3.2e-96 355.9 295 67.5
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 3.2e-96 355.9 292 68.2
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 5.5e-96 355.1 289 68.5
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 5.5e-96 355.1 302 65.2
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 9.4e-96 354.4 309 64.1
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 1.2e-95 354.0 289 68.2
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.2e-95 354.0 317 69.1
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.2e-95 354.0 269 78.1
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 3.6e-95 352.4 294 69.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.8e-94 350.1 345 59.1
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 5.1e-94 348.6 271 79.3
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 8.2e-92 341.3 349 61.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.1e-91 340.9 309 65.0
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 9.1e-91 337.8 291 71.1
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.6e-90 336.3 229 77.3
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.0e-89 334.3 334 59.9
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 1.0e-89 334.3 301 71.1
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 3.8e-89 332.4 292 61.6
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.1e-88 330.9 287 70.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.4e-85 318.2 299 68.6
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 9.7e-85 317.8 302 58.3
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.9e-80 303.5 335 62.4
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.2e-79 300.8 301 60.5
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.6e-79 299.3 292 68.8
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 5.7e-77 292.0 246 75.6
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 3.7e-76 289.3 270 62.2
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.0e-74 283.5 294 60.5
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 5.9e-74 282.0 195 74.4
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 7.2e-72 275.0 257 63.8
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.4e-72 274.6 388 48.5
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.0e-70 271.2 399 47.1
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.4e-70 270.8 248 63.3
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 2.3e-70 270.0 175 79.4
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 5.2e-70 268.9 241 65.6
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 6.8e-70 268.5 290 53.1
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 2.0e-66 256.9 217 65.4
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.5e-64 250.8 380 47.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 2.0e-58 230.3 185 75.7
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 3.6e-55 219.5 270 44.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 1.4e-54 217.6 254 53.1
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.4e-53 213.0 296 43.9
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.3e-52 211.1 147 72.1
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.4e-51 207.6 166 67.5
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.7e-49 200.7 184 59.2
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.2e-45 188.0 294 40.1
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 8.1e-39 165.2 196 50.5
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.1e-38 164.9 144 66.7
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 8.3e-36 155.2 170 66.5
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 6.0e-34 149.1 99 76.8
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.8e-30 137.5 108 70.4
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.2e-30 136.0 123 83.7
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 9.9e-29 131.7 94 68.1
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.1e-27 128.3 272 32.4
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.0e-25 120.2 171 45.0
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 9.0e-22 108.6 112 58.9
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.2e-21 108.2 92 69.6
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 1.9e-19 100.9 219 32.4
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 2.1e-18 97.4 111 72.1
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 3.6e-15 86.7 50 78.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 7.6e-13 79.0 53 77.4
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 3.5e-10 70.1 87 52.9
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 3.5e-10 70.1 45 75.6


User provided reference genes

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