Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 9.4e-157 557.8 538 100.0
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 2.5e-109 400.2 219 88.6
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 2.1e-108 397.1 219 87.2
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 4.4e-106 389.4 216 86.6
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.9e-101 374.0 221 82.4
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 1.1e-99 368.2 214 84.1
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 4.0e-99 366.3 240 73.8
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 7.5e-98 362.1 214 80.8
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 2.4e-96 357.1 214 80.4
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 2.4e-96 357.1 214 80.4
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 3.5e-95 353.2 214 79.4
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 4.6e-95 352.8 212 79.7
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 6.6e-94 349.0 213 79.3
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 4.6e-87 326.2 212 72.2
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.5e-74 284.6 213 66.2
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 5.0e-49 199.9 218 49.5
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 7.9e-47 192.6 237 43.0
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 1.8e-46 191.4 206 48.1
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 3.3e-45 187.2 228 46.1
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 1.6e-44 184.9 221 46.2
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 2.8e-44 184.1 206 48.5
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.5e-42 178.3 219 45.7
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 2.9e-41 174.1 243 42.4
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.4e-40 171.8 196 45.9
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 1.9e-40 171.4 205 45.9
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 3.2e-40 170.6 209 49.3
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 3.2e-40 170.6 209 49.3
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 3.2e-40 170.6 208 46.6
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 5.5e-40 169.9 211 44.1
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 5.5e-40 169.9 306 42.2
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.2e-39 168.7 211 47.4
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.2e-39 168.7 211 47.4
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.6e-39 168.3 199 48.2
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 2.7e-39 167.5 238 40.8
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.6e-39 167.2 210 45.2
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 4.6e-39 166.8 189 48.1
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 7.9e-39 166.0 200 44.5
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 7.9e-39 166.0 204 45.6
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 7.9e-39 166.0 203 42.4
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 1.4e-38 165.2 201 46.3
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 3.0e-38 164.1 196 44.9
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 6.7e-38 162.9 202 45.5
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 6.7e-38 162.9 209 45.5
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.5e-37 161.8 237 40.9
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 2.0e-37 161.4 204 46.6
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.5e-37 161.0 214 47.7
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 9.7e-37 159.1 245 40.0
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.7e-36 158.3 236 39.4
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.7e-36 158.3 210 44.3
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 6.3e-36 156.4 208 41.8
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 1.4e-35 155.2 191 44.5
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.4e-35 155.2 204 43.6
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 2.4e-35 154.5 184 46.2
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 2.4e-35 154.5 208 42.8
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 3.1e-35 154.1 205 41.5
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 4.1e-35 153.7 242 38.4
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 5.3e-35 153.3 203 41.4
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 6.9e-35 152.9 206 40.8
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.2e-34 152.1 215 40.9
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.5e-34 151.8 208 41.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 5.0e-33 146.7 224 40.2
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.1e-32 145.6 247 36.4
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.1e-32 145.6 207 41.5
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.5e-32 144.4 188 46.3
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 3.2e-32 144.1 139 54.0
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 3.2e-32 144.1 139 54.0
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.5e-32 143.3 181 43.6
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 9.4e-32 142.5 204 41.2
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 9.4e-32 142.5 184 44.0
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.2e-31 142.1 148 51.4
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.6e-31 141.7 210 41.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.6e-31 141.7 205 41.5
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.6e-31 141.7 205 41.5
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 2.1e-31 141.4 189 42.3
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 3.6e-31 140.6 182 44.5
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 4.7e-31 140.2 213 40.4
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 6.1e-31 139.8 183 45.4
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 7.9e-31 139.4 201 36.3
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.0e-30 139.0 233 37.8
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 1.4e-30 138.7 183 45.9
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 2.3e-30 137.9 143 52.4
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.0e-30 137.5 241 36.5
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 6.7e-30 136.3 201 41.8
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 1.1e-29 135.6 219 37.9
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 1.5e-29 135.2 241 36.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.5e-29 135.2 209 40.2
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 5.7e-29 133.3 139 51.1
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 7.4e-29 132.9 194 38.7
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 3.7e-28 130.6 203 37.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 3.7e-28 130.6 138 50.0
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 4.8e-28 130.2 160 45.6
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 6.3e-28 129.8 215 37.7
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 6.3e-28 129.8 215 36.7
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 8.2e-28 129.4 188 38.3
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 2.4e-27 127.9 132 50.8
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 2.4e-27 127.9 134 50.7
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.1e-27 127.5 138 49.3
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 5.3e-27 126.7 189 39.2
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 7.0e-27 126.3 214 36.9
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 9.1e-27 125.9 154 42.9
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 1.6e-26 125.2 194 37.1
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.5e-26 124.0 142 48.6
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.5e-26 123.6 250 34.4
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.5e-26 123.6 250 34.4
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 5.9e-26 123.2 215 36.7
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 1.0e-25 122.5 136 47.1
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.9e-24 118.2 183 39.9
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 7.2e-24 116.3 205 37.6
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 7.2e-24 116.3 136 47.1
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 9.4e-24 115.9 215 35.3
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 1.5e-21 108.6 180 36.7
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 1.5e-21 108.6 133 42.1
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 5.7e-21 106.7 93 57.0
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 9.1e-19 99.4 114 44.7
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 7.7e-18 96.3 206 32.0
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 6.1e-15 86.7 106 44.3
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 7.5e-13 79.7 178 30.3
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 1.3e-12 79.0 130 33.8
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.3e-12 79.0 130 36.9
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 2.4e-11 74.7 178 27.0
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 3.1e-11 74.3 178 28.1
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 2.7e-10 71.2 174 28.2
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 3.5e-10 70.9 178 26.4
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 4.5e-10 70.5 173 27.2
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 7.7e-10 69.7 142 29.6
Hund00538 Selenicereus undatus HOM05D006819 ORTHO05D008763 7.7e-10 69.7 164 28.0
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 1.0e-09 69.3 164 28.7
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 1.3e-09 68.9 178 26.4
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 2.2e-09 68.2 173 26.0
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 2.2e-09 68.2 168 27.4
Zm00001eb081680 Zea mays HOM05D006080 ORTHO05D007382 2.2e-09 68.2 114 34.2
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 3.8e-09 67.4 178 25.3
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 3.8e-09 67.4 109 33.9
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 5.0e-09 67.0 178 24.2
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 6.5e-09 66.6 190 25.8
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 8.5e-09 66.2 167 26.3
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 8.5e-09 66.2 114 29.8
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 1.1e-08 65.9 178 24.7
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 1.1e-08 65.9 178 24.7
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 1.5e-08 65.5 173 26.0
SGA_v2.0_scaffold16G07604 Striga asiatica HOM05D006819 ORTHO05D008763 1.5e-08 65.5 166 28.3
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.9e-08 65.1 178 26.4
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 2.5e-08 64.7 143 32.2
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 4.2e-08 63.9 157 24.2
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 4.2e-08 63.9 168 27.4
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 5.5e-08 63.5 165 25.5
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 5.5e-08 63.5 178 24.2
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 7.2e-08 63.2 132 29.5
Lsat_1_v5_gn_1_100901 Lactuca sativa HOM05D005973 ORTHO05D007285 9.5e-08 62.8 178 24.7
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 1.6e-07 62.0 168 31.5
FvH4_7g02120 Fragaria vesca HOM05D005973 ORTHO05D007285 2.1e-07 61.6 178 25.3
THA.LOC104815536 Tarenaya hassleriana HOM05D006819 ORTHO05D008763 2.1e-07 61.6 120 25.8
Migut.D01062 Erythranthe guttata HOM05D006819 ORTHO05D008763 6.1e-07 60.1 165 26.1
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 8.0e-07 59.7 113 29.2
FAN06G2970 Fragaria x ananassa HOM05D005973 ORTHO05D007285 8.0e-07 59.7 178 24.7
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 1.4e-06 58.9 168 27.4
EL10Ac4g09445 Beta vulgaris HOM05D000162 ORTHO05D000090 1.8e-06 58.5 120 30.8
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.8e-06 58.5 207 25.1
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 2.3e-06 58.2 184 27.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.0e-06 57.8 131 29.8
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 3.0e-06 57.8 165 24.8
TPR.G37179 Trifolium pratense HOM05D006819 ORTHO05D008763 3.0e-06 57.8 168 24.4
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 4.0e-06 57.4 160 25.0
GSVIVG01012670001 Vitis vinifera HOM05D000001 ORTHO05D009952 4.0e-06 57.4 125 29.6
EL10Ac4g09388 Beta vulgaris HOM05D000162 ORTHO05D000090 5.2e-06 57.0 125 28.0
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 5.2e-06 57.0 157 24.2
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 8.8e-06 56.2 192 27.1
Glyma.06G236700 Glycine max HOM05D005973 ORTHO05D007285 8.8e-06 56.2 157 25.5


User provided reference genes

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