Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 2.1e-177 625.5 310 100.0
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 1.2e-164 583.2 310 91.9
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 1.3e-163 579.7 310 91.0
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 1.7e-163 579.3 310 91.6
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 8.6e-163 577.0 307 91.2
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 1.6e-161 572.8 310 90.3
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 4.7e-161 571.2 306 90.5
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 6.2e-161 570.9 304 90.8
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 1.0e-160 570.1 306 90.2
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 1.2e-159 566.6 306 89.9
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 4.4e-159 564.7 308 88.0
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.8e-159 563.5 311 88.4
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 9.8e-159 563.5 311 88.4
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.5e-151 539.7 311 84.9
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.9e-147 525.0 310 80.6
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.9e-146 522.7 310 80.0
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 3.3e-146 521.9 310 79.4
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 1.4e-133 479.9 313 76.4
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 5.4e-133 478.0 310 73.9
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.1e-132 476.1 310 73.2
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 8.7e-131 470.7 310 72.6
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.9e-130 469.5 305 73.4
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 4.3e-130 468.4 310 74.2
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 4.3e-130 468.4 310 73.2
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 4.0e-128 461.8 310 71.3
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 1.2e-127 460.3 310 70.6
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 2.0e-127 459.5 310 70.6
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 2.0e-127 459.5 310 72.9
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 2.6e-127 459.1 310 71.0
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 2.2e-126 456.1 310 68.4
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.2e-126 456.1 310 71.9
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.2e-126 456.1 310 71.9
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 2.2e-126 456.1 315 71.7
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 2.9e-126 455.7 310 72.3
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 3.8e-126 455.3 308 71.1
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 4.9e-126 454.9 307 72.6
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 6.4e-126 454.5 309 71.5
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 8.4e-126 454.1 305 71.8
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 1.1e-125 453.8 310 71.3
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-125 453.0 310 72.3
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 1.9e-125 453.0 310 71.6
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.4e-125 452.6 310 70.3
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 2.4e-125 452.6 321 71.0
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 3.2e-125 452.2 310 70.3
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 3.2e-125 452.2 311 70.7
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 4.2e-125 451.8 310 70.3
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 9.3e-125 450.7 310 71.0
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 2.1e-124 449.5 310 71.3
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 2.1e-124 449.5 310 71.3
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 2.1e-124 449.5 308 70.1
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 2.1e-124 449.5 312 71.2
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 2.7e-124 449.1 310 70.6
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.5e-124 448.7 307 69.7
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 6.0e-124 448.0 310 70.6
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 6.0e-124 448.0 310 69.7
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 6.0e-124 448.0 309 69.3
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 6.0e-124 448.0 307 69.4
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 6.0e-124 448.0 311 70.4
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 1.0e-123 447.2 310 69.4
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 1.3e-123 446.8 308 70.1
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.0e-123 445.7 304 69.4
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 3.9e-123 445.3 307 69.4
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 6.7e-123 444.5 307 69.1
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 8.7e-123 444.1 308 70.5
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.5e-122 442.6 310 68.7
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 3.3e-122 442.2 310 69.0
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 3.3e-122 442.2 307 69.1
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.3e-121 440.3 310 70.0
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.1e-121 439.5 326 66.0
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 3.7e-121 438.7 318 68.2
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 3.7e-121 438.7 308 67.9
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 6.2e-121 438.0 310 67.7
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 6.2e-121 438.0 310 68.1
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.1e-120 437.2 309 68.0
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 1.8e-120 436.4 305 69.8
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 3.1e-120 435.6 305 67.2
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 3.1e-120 435.6 308 67.5
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 1.5e-119 433.3 307 66.4
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 1.5e-119 433.3 312 68.6
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 4.5e-119 431.8 305 66.2
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 9.9e-119 430.6 326 65.6
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 8.4e-118 427.6 305 67.9
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 2.4e-117 426.0 305 67.9
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 5.5e-117 424.9 308 67.5
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 2.7e-116 422.5 350 60.3
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.3e-115 420.2 290 70.3
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 2.3e-115 419.5 305 67.5
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 3.0e-115 419.1 307 66.1
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 2.5e-114 416.0 272 73.2
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 5.6e-114 414.8 388 56.4
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 2.1e-113 412.9 331 60.4
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.4e-111 405.6 312 64.1
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 3.4e-111 405.6 308 64.0
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 6.5e-110 401.4 306 65.7
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 9.3e-109 397.5 347 59.4
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 2.7e-108 396.0 313 62.6
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.2e-101 372.1 285 64.2
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 9.3e-101 370.9 240 73.3
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 1.6e-100 370.2 310 60.6
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 1.0e-99 367.5 307 59.9
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 3.9e-99 365.5 245 70.6
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 3.9e-99 365.5 281 65.1
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 1.1e-96 357.5 251 69.3
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 1.4e-93 347.1 241 66.4
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 3.2e-93 345.9 310 58.7
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 4.7e-92 342.0 301 56.5
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 1.8e-83 313.5 206 70.4
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 3.0e-83 312.8 305 54.4
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 3.3e-82 309.3 211 67.3
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 4.5e-79 298.9 305 51.1
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 1.0e-75 287.7 304 51.3
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 6.3e-65 251.9 292 44.2
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.0e-55 220.3 148 72.3
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 1.0e-54 218.0 291 41.6
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.9e-53 213.8 146 72.6
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 1.9e-53 213.8 181 55.2
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 3.0e-51 206.5 319 40.8
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 5.2e-51 205.7 159 62.9
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.2e-39 167.9 184 52.7
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 9.5e-37 158.3 149 55.7
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 1.3e-33 147.9 149 51.0
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 2.8e-28 130.2 106 61.3
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 5.2e-27 125.9 96 66.7
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.5e-26 124.4 96 60.4
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 3.4e-18 96.7 58 74.1
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 5.8e-18 95.9 67 65.7
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.3e-17 94.7 67 62.7
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 3.3e-13 80.1 66 60.6
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 1.6e-12 77.8 61 62.3


User provided reference genes

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