Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR103090 Cardamine hirsuta HOM05D007442 ORTHO05D009284 2.8e-48 194.9 93 100.0
vmacro09481 Vaccinium macrocarpon HOM05D007442 ORTHO05D009284 1.7e-21 105.9 55 83.6
BcaB06g26827 Brassica carinata HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
BcaC06g35915 Brassica carinata HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
C05p43360 Brassica napus HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
BolC7t41415H Brassica oleracea HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
BraA07t28440Z Brassica rapa HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
Carub.0003s2673 Capsella rubella HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
Psat2g002440 Pisum sativum HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
Sp3g23760 Schrenkiella parvula HOM05D007442 ORTHO05D009284 3.7e-21 104.8 49 98.0
Aa31LG5G16680 Aethionema arabicum HOM05D001040 ORTHO05D002795 4.9e-21 104.4 48 100.0
Dinv26606 Davidia involucrata HOM05D007442 ORTHO05D009284 4.9e-21 104.4 49 95.9
Thhalv10002726m.g Eutrema salsugineum HOM05D007442 ORTHO05D009284 4.9e-21 104.4 49 95.9
MBI16_g07768_MAGBIO Magnolia biondii HOM05D007442 ORTHO05D009284 4.9e-21 104.4 51 90.2
Potri.014G167300 Populus trichocarpa HOM05D007442 ORTHO05D009284 4.9e-21 104.4 49 95.9
Sabra14G0127300 Salix brachista HOM05D007442 ORTHO05D009284 4.9e-21 104.4 49 95.9
Phvul.008G289000 Phaseolus vulgaris HOM05D007442 ORTHO05D009284 8.4e-21 103.6 49 95.9
THA.LOC104826628 Tarenaya hassleriana HOM05D007442 ORTHO05D009284 8.4e-21 103.6 49 95.9
TPR.G35906 Trifolium pratense HOM05D007442 ORTHO05D009284 8.4e-21 103.6 49 95.9
VMungo0647G0872 Vigna mungo HOM05D007442 ORTHO05D009284 8.4e-21 103.6 49 95.9
AL3G42820 Arabidopsis lyrata HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 95.9
AT4G13500 Arabidopsis thaliana HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 95.9
arahy.Tifrunner.gnm1.ann1.8YE7LP Arachis hypogaea HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
arahy.Tifrunner.gnm1.ann1.C8HW3T Arachis hypogaea HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
CDE04G1945 Ceratophyllum demersum HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Eucgr.H00878 Eucalyptus grandis HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 91.8
Glyma.02G308900 Glycine max HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Glyma.14G004000 Glycine max HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Gohir.A07G191900 Gossypium hirsutum HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Gohir.D07G198200 Gossypium hirsutum HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Gorai.001G221800 Gossypium raimondii HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
LjContig00081g0000923 Lotus japonicus HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Manes.12G065601 Manihot esculenta HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Nn1g07499 Nelumbo nucifera HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
Sc06g0009910 Simmondsia chinensis HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
unitig_62.g23255 Utricularia gibba HOM05D007442 ORTHO05D009284 1.1e-20 103.2 49 93.9
ClCG02G009230 Citrullus lanatus HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
CsaV3_6G009590 Cucumis sativus L. HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
Oeu064352.1 Olea europaea HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
Sed0005163 Sechium edule HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
Sed0010901 Sechium edule HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
SGA_v2.0_scaffold49G18406 Striga asiatica HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 93.9
TWI18G1416 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
GSVIVG01030083001 Vitis vinifera HOM05D007442 ORTHO05D009284 1.4e-20 102.8 49 91.8
CANSAT80G0988 Cannabis sativa HOM05D007442 ORTHO05D009284 2.4e-20 102.1 49 93.9
Dinv21296 Davidia involucrata HOM05D007442 ORTHO05D009284 3.2e-20 101.7 49 91.8
Os03g0595300 Oryza sativa ssp. japonica HOM05D007442 ORTHO05D009284 3.2e-20 101.7 49 91.8
CiPaw.03G281600 Carya illinoinensis HOM05D007442 ORTHO05D009284 4.1e-20 101.3 49 89.8
Cc00_g11580 Coffea canephora HOM05D007442 ORTHO05D009284 4.1e-20 101.3 48 95.8
MSTRG.12248 Avicennia marina HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 89.8
CSS0032520 Camellia sinensis var. sinensis HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 89.8
FvH4_6g40630 Fragaria vesca HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
FAN02G0623 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
FAN05G2406 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
FAN09G1668 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
FAN14G4407 Fragaria x ananassa HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
Lalb_Chr04g0247091 Lupinus albus HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
PGR083G2291 Punica granatum HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 89.8
RcHm_v2.0_Chr2g0156001 Rosa chinensis HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
Thecc.01G195900 Theobroma cacao HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
TWI36G1704 Tripterygium wilfordii HOM05D007442 ORTHO05D009284 5.4e-20 100.9 48 91.7
Zm00001eb049770 Zea mays HOM05D007442 ORTHO05D009284 5.4e-20 100.9 49 91.8
C07p09770 Brassica napus HOM05D007442 ORTHO05D009284 7.1e-20 100.5 49 93.9
Prupe.3G197600 Prunus persica HOM05D007442 ORTHO05D009284 7.1e-20 100.5 49 89.8
Medtr5g098530 Medicago truncatula HOM05D007442 ORTHO05D009284 9.2e-20 100.1 49 91.8
PGSC0003DMG400018833 Solanum tuberosum HOM05D007442 ORTHO05D009284 9.2e-20 100.1 49 93.9
Duzib138G0628 Durio zibethinus HOM05D007442 ORTHO05D009284 1.2e-19 99.8 48 91.7
Migut.H01284 Erythranthe guttata HOM05D007442 ORTHO05D009284 1.2e-19 99.8 49 89.8
HanXRQChr11g0329011 Helianthus annuus HOM05D007442 ORTHO05D009284 1.2e-19 99.8 49 89.8
MD17G1116900 Malus domestica HOM05D007442 ORTHO05D009284 1.6e-19 99.4 49 89.8
Actinidia35204 Actinidia chinensis HOM05D007442 ORTHO05D009284 2.1e-19 99.0 49 89.8
Nitab4.5_0000006g0670 Nicotiana tabacum HOM05D007442 ORTHO05D009284 2.1e-19 99.0 49 91.8
Nitab4.5_0002154g0020 Nicotiana tabacum HOM05D007442 ORTHO05D009284 2.1e-19 99.0 49 91.8
Solyc05g024430.3 Solanum lycopersicum HOM05D007442 ORTHO05D009284 2.1e-19 99.0 49 91.8
Sopen05g019430 Solanum pennellii HOM05D007442 ORTHO05D009284 2.1e-19 99.0 49 91.8
Peaxi162Scf00147g01918 Petunia axillaris HOM05D007442 ORTHO05D009284 2.7e-19 98.6 49 89.8
QL04p068504 Quercus lobata HOM05D007442 ORTHO05D009284 2.7e-19 98.6 47 89.4
Lsat_1_v5_gn_7_96821 Lactuca sativa HOM05D007442 ORTHO05D009284 4.6e-19 97.8 49 89.8
Duzib211G0040 Durio zibethinus HOM05D007442 ORTHO05D009284 6.0e-19 97.4 49 87.8
ECA236G2600 Erigeron canadensis HOM05D007442 ORTHO05D009284 6.0e-19 97.4 49 87.8
Lj8A135T99 Lonicera japonica HOM05D007442 ORTHO05D009284 6.0e-19 97.4 49 89.8
DCAR_021093 Daucus carota HOM05D007442 ORTHO05D009284 7.8e-19 97.1 49 85.7
MD09G1126600 Malus domestica HOM05D007442 ORTHO05D009284 7.8e-19 97.1 49 87.8
PSO210G6456 Papaver somniferum HOM05D007442 ORTHO05D009284 7.8e-19 97.1 49 87.8
PSO302G0215 Papaver somniferum HOM05D007442 ORTHO05D009284 7.8e-19 97.1 49 87.8
Ciclev10017197m.g Citrus clementina HOM05D007442 ORTHO05D009284 1.0e-18 96.7 48 85.4
Atru.BG.34.p Acer truncatum HOM05D007442 ORTHO05D009284 1.3e-18 96.3 46 91.3
Cfa014227 Carpinus fangiana HOM05D007442 ORTHO05D009284 1.7e-18 95.9 48 85.4
TAR629G1602 Trochodendron aralioides HOM05D007442 ORTHO05D009284 3.0e-18 95.1 44 95.5
EL10Ac9g22680 Beta vulgaris HOM05D007442 ORTHO05D009284 5.1e-18 94.4 46 87.0
Haze_12630 Corylus avellana HOM05D007442 ORTHO05D009284 6.6e-18 94.0 44 90.9
SEGI_21691 Sequoiadendron giganteum HOM05D007442 ORTHO05D009284 2.8e-16 88.6 49 75.5
SMO364G0127 Selaginella moellendorffii HOM05D007442 ORTHO05D009284 1.4e-15 86.3 47 76.6
Mapoly0072s0101 Marchantia polymorpha HOM05D007442 ORTHO05D009284 1.3e-13 79.7 49 67.3
AagrBONN_evm.TU.Sc2ySwM_368.44 Anthoceros agrestis HOM05D007442 ORTHO05D009284 2.4e-12 75.5 49 61.2
Pp3c21_15030 Physcomitrium patens HOM05D007442 ORTHO05D009284 5.1e-10 67.8 46 58.7


User provided reference genes

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