Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR101110 Cardamine hirsuta HOM05D008274 ORTHO05D010930 5.3e-40 167.2 80 100.0
CARHR101100 Cardamine hirsuta HOM05D008274 ORTHO05D010930 1.4e-37 159.1 80 95.0
CARHR101090 Cardamine hirsuta HOM05D008274 ORTHO05D010930 4.8e-25 117.5 80 73.8
AT4G30064 Arabidopsis thaliana HOM05D008274 ORTHO05D010930 5.9e-15 84.0 80 56.2
AL7G22160 Arabidopsis lyrata HOM05D008274 ORTHO05D010930 2.2e-14 82.0 73 54.8
CARHR164790 Cardamine hirsuta HOM05D008274 ORTHO05D010930 2.2e-14 82.0 70 60.0
Sp7g27860 Schrenkiella parvula HOM05D008274 ORTHO05D024519 1.1e-13 79.7 80 53.8
Thhalv10027260m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 5.5e-13 77.4 69 53.6
Sp7g27910 Schrenkiella parvula HOM05D008274 ORTHO05D033960 7.2e-13 77.0 68 55.9
AT2G29045 Arabidopsis thaliana HOM05D008274 ORTHO05D010930 9.4e-13 76.6 80 50.0
Thhalv10027161m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 2.7e-12 75.1 70 51.4
Thhalv10027526m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 6.1e-12 73.9 70 51.4
AL3G47880 Arabidopsis lyrata HOM05D008274 ORTHO05D010930 1.4e-11 72.8 73 49.3
BraA09t36919Z Brassica rapa HOM05D008274 ORTHO05D010930 1.4e-11 72.8 71 50.7
Thhalv10028327m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 1.4e-11 72.8 80 55.0
A09p12750 Brassica napus HOM05D008274 ORTHO05D010930 2.3e-11 72.0 71 50.7
Thhalv10026709m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 6.7e-11 70.5 82 48.8
Thhalv10026917m.g Eutrema salsugineum HOM05D008274 ORTHO05D033960 1.1e-10 69.7 74 50.0
A02p12430 Brassica napus HOM05D008274 ORTHO05D010930 1.5e-10 69.3 80 50.0
BraA02t06307Z Brassica rapa HOM05D008274 ORTHO05D010930 1.5e-10 69.3 80 50.0
Carub.0007s1054 Capsella rubella HOM05D008274 ORTHO05D033960 1.5e-10 69.3 76 51.3
Sp3g33440 Schrenkiella parvula HOM05D008274 ORTHO05D010930 1.5e-10 69.3 71 52.1
BcaB05g24016 Brassica carinata HOM05D008274 ORTHO05D010930 2.0e-10 68.9 80 48.8
Carub.0004s1003 Capsella rubella HOM05D008274 ORTHO05D010930 2.0e-10 68.9 70 47.1
BolC2t08191H Brassica oleracea HOM05D008274 ORTHO05D010930 2.6e-10 68.6 80 48.8
C02p20550 Brassica napus HOM05D008274 ORTHO05D010930 5.7e-10 67.4 80 47.5
Thhalv10002176m.g Eutrema salsugineum HOM05D008274 ORTHO05D010930 5.7e-10 67.4 71 53.5
Carub.0003s3453 Capsella rubella HOM05D008274 ORTHO05D010930 9.7e-10 66.6 72 50.0
Carub.0007s1057 Capsella rubella HOM05D008274 ORTHO05D010930 9.7e-10 66.6 72 47.2
AT4G30067 Arabidopsis thaliana HOM05D008274 ORTHO05D010930 1.3e-09 66.2 70 45.7
AT2G20208 Arabidopsis thaliana HOM05D008274 ORTHO05D010930 2.8e-09 65.1 72 47.2
BraA01t00752Z Brassica rapa HOM05D008274 ORTHO05D010930 6.3e-09 63.9 70 45.7
A01p08070 Brassica napus HOM05D008274 ORTHO05D010930 8.2e-09 63.5 70 44.3
C07p40820 Brassica napus HOM05D008274 ORTHO05D020184 1.4e-08 62.8 70 42.9
A06p37540 Brassica napus HOM05D008274 ORTHO05D020184 9.1e-08 60.1 70 40.0
BraA06t26676Z Brassica rapa HOM05D008274 ORTHO05D020184 9.1e-08 60.1 70 40.0
Carub.0007s1056 Capsella rubella HOM05D008274 ORTHO05D010930 9.1e-08 60.1 74 43.2
A02p26220 Brassica napus HOM05D008274 ORTHO05D020184 1.2e-07 59.7 69 40.6
A04p10580 Brassica napus HOM05D008274 ORTHO05D010930 1.2e-07 59.7 72 45.8
C04p44220 Brassica napus HOM05D008274 ORTHO05D010930 1.2e-07 59.7 72 45.8
BraA02t07623Z Brassica rapa HOM05D008274 ORTHO05D020184 1.2e-07 59.7 69 40.6
BolC7t44604H Brassica oleracea HOM05D008274 ORTHO05D020184 6.5e-06 53.9 56 46.4
Aa31LG2G20500 Aethionema arabicum HOM05D008274 ORTHO05D010930 8.5e-06 53.5 50 42.0


User provided reference genes

Program Settings