Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 0.0e+00 1081.6 550 100.0
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.9e-294 1014.6 549 93.8
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.4e-293 1012.3 550 94.2
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 4.1e-293 1010.7 550 94.0
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.5e-292 1007.7 550 92.5
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 7.8e-292 1006.5 550 93.1
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.8e-273 944.9 552 87.5
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.1e-272 941.4 551 85.5
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.2e-271 939.5 555 87.2
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 5.8e-271 937.2 561 86.3
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.8e-270 934.5 553 85.0
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 9.3e-269 929.9 555 86.5
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 4.6e-268 927.5 561 85.6
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.6e-265 917.9 553 86.1
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.5e-255 884.4 548 80.7
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.7e-254 882.5 548 80.7
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 8.4e-254 880.2 549 80.7
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 3.5e-252 874.8 550 80.5
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 6.0e-252 874.0 564 78.4
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 1.0e-246 856.7 549 77.2
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 2.2e-246 855.5 563 76.4
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 3.8e-246 854.7 555 77.7
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.9e-245 852.4 549 77.2
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 3.2e-245 851.7 549 76.7
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 4.2e-245 851.3 555 77.3
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 7.1e-245 850.5 549 76.1
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 9.3e-245 850.1 549 76.5
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.2e-244 849.7 549 75.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.6e-244 849.4 550 77.1
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 3.5e-244 848.2 569 75.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 7.9e-244 847.0 572 75.5
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 1.0e-243 846.7 549 76.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 3.0e-243 845.1 556 77.0
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 3.0e-243 845.1 550 75.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 6.7e-243 844.0 549 75.6
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.1e-242 843.2 562 74.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.5e-242 842.8 549 75.8
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.5e-242 842.8 549 76.0
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 7.4e-242 840.5 551 77.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 9.7e-242 840.1 549 74.3
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.3e-241 839.7 549 76.0
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.3e-241 839.7 578 73.0
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.6e-241 839.3 549 74.9
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.6e-241 839.3 549 75.2
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.1e-241 839.0 594 71.7
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 2.1e-241 839.0 532 78.8
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 3.7e-241 838.2 516 78.5
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.8e-241 837.8 549 76.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 8.2e-241 837.0 549 76.5
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 8.2e-241 837.0 550 76.2
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.8e-240 835.9 576 73.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 5.3e-240 834.3 549 75.6
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 1.5e-239 832.8 553 74.3
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 3.8e-238 828.2 576 73.6
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 5.0e-238 827.8 555 75.1
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 6.5e-238 827.4 549 74.9
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 6.5e-238 827.4 555 74.4
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 1.4e-237 826.2 558 74.9
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 7.9e-236 820.5 539 77.2
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.0e-235 820.1 535 77.8
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.0e-235 820.1 550 74.7
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 2.3e-235 818.9 551 72.8
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 2.5e-234 815.5 551 74.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 3.3e-234 815.1 502 78.5
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 4.3e-234 814.7 597 70.2
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.0e-231 805.8 595 69.9
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.4e-231 805.1 535 76.8
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 4.6e-228 794.7 568 72.5
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 5.1e-227 791.2 524 74.0
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 4.4e-226 788.1 665 63.5
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.4e-224 783.1 587 69.7
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.4e-224 782.3 512 75.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.5e-223 779.6 538 71.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.5e-223 778.1 531 72.3
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 6.5e-222 774.2 462 80.3
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.9e-219 765.0 608 66.4
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 5.9e-215 751.1 494 76.7
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.6e-212 741.9 562 69.4
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.7e-212 741.5 549 70.5
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.3e-211 739.2 523 71.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.7e-209 733.0 440 79.3
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 6.3e-209 731.1 597 65.2
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 6.3e-209 731.1 541 69.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.1e-208 728.4 486 74.7
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.0e-206 723.8 526 67.7
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.9e-205 719.5 550 68.4
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 8.0e-204 714.1 488 71.7
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-202 710.3 587 64.7
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 3.4e-202 708.8 497 71.4
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.7e-201 706.4 518 66.4
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 8.3e-201 704.1 440 78.0
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 3.8e-198 695.3 486 71.8
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-190 669.8 488 70.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 7.3e-189 664.5 531 60.5
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.6e-186 656.0 425 73.6
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.4e-186 655.2 504 64.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.3e-185 653.7 574 61.3
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.9e-181 639.8 519 61.5
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.3e-179 632.9 423 71.9
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 3.1e-179 632.5 556 61.0
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 5.2e-179 631.7 511 65.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 3.6e-172 609.0 471 66.2
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 6.4e-169 598.2 549 59.7
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 7.3e-165 584.7 453 67.8
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.8e-163 580.1 349 83.4
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.3e-161 573.9 319 91.2
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 2.5e-157 559.7 486 57.4
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 4.4e-154 548.9 485 57.7
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 2.2e-153 546.6 369 76.7
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 4.6e-151 538.9 319 84.0
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.0e-134 484.6 293 82.6
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.3e-134 483.4 481 47.4
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 7.4e-117 425.2 271 79.3
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-109 401.4 440 50.0
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.8e-108 396.7 256 76.2
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.0e-107 392.1 388 58.0
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.2e-98 364.8 228 77.6
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 1.1e-88 331.6 205 80.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 7.5e-85 318.9 212 74.5
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 5.2e-78 296.2 183 79.2
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 3.7e-76 290.0 472 37.5
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.4e-75 286.2 195 73.3
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.0e-74 284.3 214 67.3
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 2.7e-74 283.9 213 67.1
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 4.6e-66 256.5 244 58.6
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.4e-61 240.4 135 77.0
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-55 221.9 139 77.0
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.8e-54 218.0 251 51.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 2.1e-50 204.5 467 31.5
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 3.0e-41 174.1 361 33.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 6.2e-39 166.4 89 82.0
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 6.2e-39 166.4 89 82.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 3.1e-38 164.1 134 61.2
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.1e-35 152.9 146 56.2
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.6e-34 150.2 120 71.7
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 3.1e-30 137.5 151 55.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.2e-29 135.6 123 57.7
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.6e-29 134.4 111 66.7
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 3.5e-26 124.0 140 53.6
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 3.5e-26 124.0 69 82.6
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.5e-21 108.6 63 88.9
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 2.6e-21 107.8 106 60.4
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.9e-20 103.6 64 78.1
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 6.5e-20 103.2 84 59.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.2e-19 100.9 125 44.0
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 7.1e-19 99.8 52 88.5
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.2e-18 99.0 70 74.3
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 6.0e-18 96.7 54 90.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.4e-14 85.5 61 70.5
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.0e-13 81.6 58 72.4
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 7.1e-11 73.2 90 47.8
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 3.5e-10 70.9 72 55.6
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.0e-09 69.3 46 73.9
C01p25580 Brassica napus HOM05D016273 ORTHO05D019880 3.0e-09 67.8 89 49.4
BcaC09g50697 Brassica carinata HOM05D016273 ORTHO05D019880 3.9e-09 67.4 87 46.0
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.1e-09 67.0 45 71.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 8.7e-09 66.2 51 62.7
A10p05650 Brassica napus HOM05D016273 ORTHO05D019880 5.7e-08 63.5 83 45.8
BraA10t42826Z Brassica rapa HOM05D016273 ORTHO05D019880 5.7e-08 63.5 83 45.8
C03p82190 Brassica napus HOM05D016273 ORTHO05D019880 7.4e-08 63.2 83 45.8
BolC3t20533H Brassica oleracea HOM05D016273 ORTHO05D019880 7.4e-08 63.2 83 45.8
C01p22240 Brassica napus HOM05D016273 ORTHO05D019880 2.8e-07 61.2 78 46.2
BolC1t02154H Brassica oleracea HOM05D016273 ORTHO05D106340 3.7e-07 60.8 87 44.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 3.1e-06 57.8 43 62.8
BcaB06g27551 Brassica carinata HOM05D004684 ORTHO05D094740 4.1e-06 57.4 90 38.9


User provided reference genes

Program Settings