Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.0e-101 371.7 229 100.0
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 3.8e-75 285.4 230 70.9
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 8.5e-75 284.3 230 70.9
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 9.4e-74 280.8 230 70.9
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 9.4e-74 280.8 230 70.9
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 9.4e-74 280.8 230 70.9
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 8.8e-72 274.2 231 69.3
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.0e-68 263.1 234 70.1
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.6e-65 253.4 229 65.5
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.0e-56 222.6 230 60.9
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.2e-47 194.1 230 56.5
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 2.4e-45 186.4 231 55.4
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 4.3e-42 175.6 227 51.1
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.4e-40 170.6 229 48.9
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.4e-40 170.6 227 49.3
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 6.8e-40 168.3 227 49.3
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.2e-39 167.5 230 47.4
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 1.1e-37 161.0 228 48.7
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 4.1e-37 159.1 227 48.0
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 4.1e-37 159.1 227 48.0
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 5.4e-37 158.7 198 51.0
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.6e-36 157.1 228 47.4
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 3.5e-36 156.0 220 50.9
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 6.0e-36 155.2 227 48.0
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 3.0e-35 152.9 225 47.6
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 3.9e-35 152.5 227 45.8
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 8.6e-35 151.4 198 52.5
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 4.7e-33 145.6 225 45.3
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.1e-26 124.4 227 40.5
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 4.3e-26 122.5 245 42.0
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.1e-24 116.3 174 48.3
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 6.8e-24 115.2 174 47.7
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.4e-23 112.5 200 42.0
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 5.8e-23 112.1 174 47.7
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 7.6e-23 111.7 172 47.7
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.7e-22 110.5 184 45.1
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 1.7e-22 110.5 218 41.3
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.1e-21 107.8 174 46.6
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 2.4e-21 106.7 178 44.9
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 5.4e-21 105.5 181 43.1
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 9.2e-21 104.8 185 43.2
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 9.2e-21 104.8 246 39.4
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.2e-20 104.4 252 38.5
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.6e-20 104.0 207 37.2
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.6e-20 104.0 201 39.8
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.1e-20 103.6 253 38.3
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 2.7e-20 103.2 210 40.0
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 4.6e-20 102.4 183 41.5
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.6e-20 102.4 253 37.9
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.6e-20 102.4 253 37.9
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 4.6e-20 102.4 165 42.4
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 7.8e-20 101.7 253 37.9
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 7.8e-20 101.7 223 39.9
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.3e-19 100.9 190 40.0
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.3e-19 100.9 253 37.9
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.7e-19 100.5 177 42.9
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 3.0e-19 99.8 185 41.1
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 5.1e-19 99.0 91 63.7
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 8.6e-19 98.2 227 37.9
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 8.6e-19 98.2 227 37.9
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.5e-18 97.4 225 38.7
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 2.5e-18 96.7 156 43.6
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.5e-18 96.7 201 39.8
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.3e-18 96.3 177 41.2
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 3.3e-18 96.3 260 37.3
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 4.3e-18 95.9 170 42.4
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 1.6e-17 94.0 241 35.3
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.8e-17 93.2 189 39.2
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 4.7e-17 92.4 188 38.8
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 4.7e-17 92.4 188 38.3
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 1.1e-16 91.3 177 41.8
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.1e-16 91.3 184 38.6
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 2.4e-16 90.1 184 42.4
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 2.4e-16 90.1 168 41.7
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 2.4e-16 90.1 193 38.9
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 3.1e-16 89.7 197 37.6
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.0e-16 89.4 186 37.1
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 4.0e-16 89.4 190 37.4
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 5.2e-16 89.0 204 36.3
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 5.2e-16 89.0 178 39.3
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 6.8e-16 88.6 183 36.1
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 6.8e-16 88.6 181 37.6
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 8.9e-16 88.2 186 40.9
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 8.9e-16 88.2 172 39.0
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.5e-15 87.4 203 35.0
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.5e-15 87.4 193 36.8
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.5e-15 87.4 237 35.0
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 2.0e-15 87.0 180 39.4
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.4e-15 86.3 181 38.7
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 3.4e-15 86.3 127 42.5
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 5.8e-15 85.5 172 40.1
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 9.9e-15 84.7 190 37.9
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 2.2e-14 83.6 176 39.2
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.9e-14 83.2 227 35.7
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 3.8e-14 82.8 198 36.4
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 4.9e-14 82.4 211 34.1
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 6.4e-14 82.0 131 45.8
C03p53500 Brassica napus HOM05D005697 ORTHO05D006951 6.4e-14 82.0 114 48.2
BolC3t17610H Brassica oleracea HOM05D005697 ORTHO05D006951 6.4e-14 82.0 114 48.2
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 8.4e-14 81.6 167 38.3
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.1e-13 81.3 207 33.8
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.1e-13 81.3 185 35.1
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 3.2e-13 79.7 198 35.4
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 3.2e-13 79.7 188 35.6
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 4.2e-13 79.3 115 41.7
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 4.2e-13 79.3 113 44.2
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 7.1e-13 78.6 194 35.1
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.6e-12 77.4 188 35.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 2.7e-12 76.6 195 36.9
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 3.5e-12 76.3 177 39.0
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.6e-12 75.9 113 41.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.0e-11 74.7 106 41.5
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.7e-11 73.9 202 33.2
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 3.0e-11 73.2 202 32.2
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 3.9e-11 72.8 189 34.4
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 6.6e-11 72.0 262 29.8
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 6.6e-11 72.0 101 42.6
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.1e-10 71.2 190 32.6
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 1.5e-10 70.9 202 34.7
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.9e-10 70.5 185 33.5
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 2.5e-10 70.1 176 35.8
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 2.5e-10 70.1 196 36.2
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.3e-10 69.3 188 34.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 5.6e-10 68.9 235 31.9
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 7.3e-10 68.6 184 34.8
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 6.9e-08 62.0 188 32.4
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 6.9e-08 62.0 169 31.4
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 9.0e-08 61.6 108 39.8
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 9.0e-08 61.6 195 35.4
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 2.9e-06 56.6 178 32.0


User provided reference genes

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