Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 0.0e+00 1163.7 736 100.0
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.7e-262 909.4 742 79.0
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.2e-257 892.5 743 78.9
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 3.2e-248 862.1 748 75.4
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.5e-245 853.2 741 77.2
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 1.3e-241 840.1 747 72.2
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 4.2e-216 755.4 750 71.6
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 2.5e-208 729.6 746 70.8
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-207 727.2 744 66.8
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.4e-192 677.2 723 64.9
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.4e-189 665.6 745 66.7
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 7.4e-189 664.8 588 73.1
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 3.8e-185 652.5 745 66.6
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-184 651.0 748 68.3
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 9.7e-181 637.9 800 61.8
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 5.9e-178 628.6 813 55.6
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 9.8e-173 611.3 755 53.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.4e-171 607.4 751 56.7
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 4.2e-168 595.9 741 59.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 4.3e-160 569.3 745 60.5
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.7e-146 523.5 741 56.5
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 5.8e-141 505.8 721 59.6
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 3.2e-123 446.8 593 58.3
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.6e-122 444.5 590 57.8
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.9e-99 367.9 830 40.2
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 7.6e-93 345.9 809 36.6
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 4.6e-90 336.7 787 38.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.3e-89 335.1 815 36.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.3e-89 334.3 805 36.4
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 8.7e-89 332.4 807 36.6
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-88 332.0 764 43.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 1.1e-88 332.0 816 41.7
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 4.3e-88 330.1 817 39.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.2e-87 327.8 798 35.8
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.1e-86 325.5 803 38.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.4e-86 325.1 620 43.4
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.4e-86 324.3 776 36.1
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.1e-86 323.6 767 36.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.1e-86 323.6 795 36.2
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.9e-86 322.8 597 46.4
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 6.9e-86 322.8 837 41.6
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.2e-85 322.0 778 42.4
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.5e-85 321.6 807 36.7
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 1.5e-85 321.6 797 37.5
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.0e-85 321.2 801 37.2
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-84 318.9 464 47.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 2.9e-84 317.4 440 52.5
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 5.0e-84 316.6 787 35.6
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.9e-83 314.7 591 41.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 7.2e-83 312.8 787 36.3
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.2e-82 312.0 822 34.4
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.7e-82 310.8 785 42.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-82 310.5 775 36.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-81 308.9 770 36.0
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.0e-81 308.9 610 38.4
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.0e-81 308.9 791 34.8
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 1.5e-80 305.1 792 39.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.5e-80 305.1 769 40.3
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.0e-80 304.7 809 36.2
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.3e-80 303.9 791 37.5
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 9.7e-80 302.4 787 34.1
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.3e-79 302.0 873 38.8
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 4.8e-79 300.1 798 32.7
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 8.2e-79 299.3 782 33.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 7.7e-77 292.7 830 36.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 7.7e-77 292.7 826 34.0
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 7.7e-77 292.7 805 38.8
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.3e-76 292.0 815 39.4
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.2e-76 291.2 559 39.2
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.2e-76 291.2 589 44.7
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.1e-75 288.9 788 39.3
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 1.1e-75 288.9 612 46.1
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 3.2e-75 287.3 785 34.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 3.2e-75 287.3 814 39.2
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 7.2e-75 286.2 755 34.8
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.1e-74 284.6 700 35.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.9e-74 282.7 817 33.0
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.4e-73 282.0 657 41.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 1.8e-73 281.6 780 33.3
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 5.2e-73 280.0 831 37.3
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 8.8e-73 279.3 769 39.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.5e-72 278.5 492 39.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.0e-72 278.1 815 34.5
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.0e-72 278.1 831 33.5
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 3.3e-72 277.3 688 38.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.4e-72 276.9 766 37.7
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 9.7e-72 275.8 811 32.8
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.7e-71 275.0 818 39.6
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.2e-71 274.6 836 37.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.7e-71 273.9 763 36.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 8.2e-71 272.7 794 33.6
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.4e-70 271.9 517 38.7
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 1.4e-70 271.9 815 31.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-70 270.8 770 36.5
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.1e-70 270.4 816 38.0
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 4.1e-70 270.4 791 33.4
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 9.1e-70 269.2 797 40.0
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-69 268.1 769 37.6
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.6e-69 267.7 830 35.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 7.7e-69 266.2 367 43.6
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.7e-68 265.0 797 32.0
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.5e-68 263.1 797 33.1
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 8.5e-68 262.7 686 35.1
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.1e-67 262.3 813 33.0
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 1.5e-67 261.9 814 33.2
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-67 261.9 795 38.7
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.5e-67 261.2 830 37.6
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.5e-67 261.2 832 36.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.2e-66 258.8 813 33.2
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.2e-66 258.8 779 35.4
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.1e-66 258.1 788 37.8
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 7.5e-64 249.6 547 43.9
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 9.7e-64 249.2 511 45.6
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.2e-63 248.1 829 36.2
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 3.7e-63 247.3 768 38.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 8.2e-63 246.1 710 38.7
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 2.4e-62 244.6 822 37.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.4e-62 244.6 747 33.6
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.6e-61 241.9 759 31.1
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.7e-60 238.4 765 37.5
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.9e-60 237.7 745 32.2
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 8.5e-60 236.1 524 47.5
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.2e-59 234.2 566 40.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.6e-58 231.9 498 45.0
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 1.8e-57 228.4 675 39.4
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 4.0e-57 227.3 698 38.1
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 2.4e-54 218.0 707 31.5
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.6e-50 204.1 820 34.1
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 8.0e-50 203.0 995 28.1
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 3.0e-49 201.1 695 33.8
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.5e-48 198.7 298 42.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.2e-41 173.7 260 49.2
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.4e-38 163.7 302 49.7
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.0e-37 161.8 163 54.0
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.1e-35 156.0 801 31.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.4e-30 138.3 560 30.9
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 2.7e-29 134.8 100 73.0
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.3e-28 132.5 421 29.5
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.5e-27 129.0 115 59.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.8e-25 122.1 423 27.7
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.4e-22 112.5 421 25.9
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 5.4e-22 110.5 131 50.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 2.7e-21 108.2 405 32.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.6e-21 107.5 389 38.3
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 2.3e-20 105.1 760 25.1
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 2.1e-18 98.6 565 25.0
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.4e-17 95.9 537 26.3
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-17 94.7 74 67.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-15 88.6 66 68.2
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.8e-15 87.8 69 66.7
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.8e-15 87.8 62 72.6
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 4.1e-14 84.3 57 71.9
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.2e-13 82.8 401 23.9
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 1.0e-12 79.7 527 26.2
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 3.9e-12 77.8 49 81.6
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 9.6e-11 73.2 55 69.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.1e-10 72.0 55 69.1
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.6e-10 71.2 47 76.6
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.1e-09 69.7 47 74.5
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.4e-09 69.3 96 43.8
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 1.4e-09 69.3 60 60.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-09 68.9 48 75.0
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.1e-09 68.2 50 68.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.0e-09 66.6 50 66.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.5e-08 65.9 47 70.2
AL5G30090 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.6e-08 65.1 41 87.8
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.6e-08 63.5 39 82.1
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.9e-08 63.2 39 82.1
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-07 61.2 39 76.9
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 4.9e-07 60.8 134 38.1
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.4e-07 60.5 39 76.9
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.4e-07 60.1 39 76.9
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-06 58.9 39 74.4
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 2.4e-06 58.5 72 43.1
Gohir.D08G175500 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-06 57.8 39 74.4
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 7.1e-06 57.0 37 75.7


User provided reference genes

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