Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.2e-262 907.9 618 100.0
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.7e-157 560.5 609 63.7
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.5e-155 552.7 611 69.7
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.7e-152 543.1 605 67.8
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.8e-149 533.1 604 66.7
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.6e-144 517.3 622 65.4
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 7.8e-115 418.7 568 55.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.6e-112 411.0 603 56.4
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.9e-109 400.2 611 54.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 6.0e-107 392.5 617 51.1
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 5.6e-105 386.0 619 53.0
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.8e-103 380.9 547 46.8
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 2.4e-103 380.6 619 51.5
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.5e-102 377.9 619 51.1
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 3.4e-102 376.7 622 50.8
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 7.6e-102 375.6 589 44.5
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.4e-100 371.3 424 57.5
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 1.4e-100 371.3 563 48.0
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.2e-99 368.2 583 44.4
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 7.8e-99 365.5 575 45.4
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 5.1e-98 362.8 554 46.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.7e-98 362.1 590 46.3
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 3.3e-97 360.1 564 46.3
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 7.3e-97 359.0 587 45.8
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.1e-96 355.5 558 48.0
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 8.1e-96 355.5 576 51.0
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.4e-95 354.8 553 53.5
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 1.8e-95 354.4 569 41.1
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 4.0e-95 353.2 560 46.4
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 6.9e-95 352.4 654 40.5
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 6.9e-95 352.4 571 44.0
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.2e-94 351.7 570 46.1
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.5e-94 351.3 574 40.4
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.6e-94 350.5 598 48.3
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.4e-94 350.1 588 49.8
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.9e-93 347.1 584 38.7
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 3.8e-93 346.7 566 43.3
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.9e-92 344.4 598 46.8
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.4e-92 344.0 541 49.5
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.2e-92 343.6 580 49.0
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.6e-91 341.3 551 43.7
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.1e-91 340.9 596 46.5
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.0e-90 338.6 571 45.4
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.0e-90 338.6 551 44.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 2.3e-90 337.4 544 42.3
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 3.0e-90 337.0 612 46.1
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.9e-89 334.3 563 43.0
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 5.6e-89 332.8 580 42.4
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.8e-88 330.5 564 47.3
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.6e-88 330.1 554 42.4
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.1e-87 328.6 561 47.4
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.1e-87 328.6 555 44.9
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.8e-87 327.8 560 44.3
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 3.1e-87 327.0 564 42.7
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 3.1e-87 327.0 548 46.9
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 3.1e-87 327.0 557 44.3
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 9.0e-87 325.5 540 40.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.2e-86 325.1 582 48.5
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 9.9e-86 322.0 594 40.1
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.7e-85 321.2 555 40.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 1.4e-84 318.2 573 44.7
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 4.2e-84 316.6 535 49.3
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-83 315.1 557 45.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.2e-83 315.1 537 48.2
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 2.1e-83 314.3 554 49.1
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.0e-82 312.0 599 48.2
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.8e-82 311.2 559 44.2
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 1.5e-81 308.1 536 49.3
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.5e-81 307.4 460 46.1
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.4e-81 305.8 554 49.6
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 6.9e-79 299.3 538 46.7
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.5e-78 298.1 501 42.5
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.6e-78 297.4 528 47.5
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 3.4e-78 297.0 583 39.8
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 5.8e-78 296.2 538 46.5
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 7.6e-78 295.8 584 44.2
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.3e-77 295.0 520 48.8
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.2e-77 294.3 554 41.3
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.9e-77 293.9 556 48.6
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 8.4e-77 292.4 620 37.9
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 4.2e-76 290.0 594 41.8
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 4.6e-75 286.6 562 40.7
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 6.0e-75 286.2 544 45.4
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 7.9e-75 285.8 548 49.5
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.0e-74 285.4 490 45.1
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.3e-74 285.0 439 49.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 9.6e-73 278.9 630 40.2
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 2.8e-72 277.3 546 46.3
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.1e-68 265.4 553 48.5
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.3e-66 258.5 570 43.0
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.3e-66 257.7 540 40.0
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.0e-66 257.3 575 38.3
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.7e-66 255.8 549 44.4
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 2.5e-65 254.2 531 41.2
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 3.3e-65 253.8 559 41.5
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 7.4e-65 252.7 556 41.2
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 2.2e-64 251.1 553 36.2
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.3e-61 241.9 563 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.9e-61 240.7 583 38.1
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 2.5e-60 237.7 555 38.2
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 7.2e-60 236.1 612 33.2
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 5.1e-58 229.9 605 41.2
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.4e-55 221.1 569 37.4
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 6.9e-55 219.5 586 38.1
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.2e-54 218.8 413 41.2
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.5e-49 201.8 423 38.5
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 9.1e-47 192.6 547 32.4
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-45 188.7 533 36.2
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.1e-44 185.7 413 37.0
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.9e-44 184.9 253 45.5
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 3.6e-43 180.6 233 49.4
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.4e-39 168.7 166 74.1
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 1.7e-32 145.2 531 34.3
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.4e-31 141.4 221 40.7
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 4.1e-31 140.6 587 33.4
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 9.1e-31 139.4 595 34.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 2.2e-29 134.8 164 45.1
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 6.1e-27 126.7 341 41.1
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.5e-25 122.1 104 55.8
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 8.3e-24 116.3 287 38.0
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 2.4e-23 114.8 209 47.8
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.0e-21 109.4 591 31.3
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.3e-21 108.2 321 31.2
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.7e-16 92.0 163 36.2
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.4e-15 89.0 532 24.8
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 9.2e-15 86.3 68 55.9
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 4.4e-09 67.4 461 26.9
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.1e-07 62.8 87 50.6
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.4e-07 62.4 88 53.4
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-06 59.3 88 51.1
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 1.2e-06 59.3 153 41.8
BcaB01g00592 Brassica carinata HOM05D057673 ORTHO05D006636 1.6e-06 58.9 83 47.0
BcaB01g00593 Brassica carinata HOM05D057673 ORTHO05D006636 1.6e-06 58.9 83 47.0


User provided reference genes

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